RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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Fliter by DE/TSE:

total numbers: 571

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR156f-3p	miRbase		Chr8	21478393	21478414	+	Y/N
osa-miR156h-3p	miRbase		Chr8	21491395	21491416	+	Y/N
Osa-miR160a	miRbase/PmiREN	/	Chr2	3511649	3511669	-	Y/N
osa-miR160a-3p	miRbase		Chr2	3511586	3511606	-	Y/N
Osa-miR160b	miRbase/PmiREN	/	Chr6	28081049	28081069	+	Y/N
osa-miR160b-3p	miRbase		Chr6	28081112	28081132	+	Y/N
Osa-miR160c	miRbase/PmiREN	/	Chr8	1707574	1707594	+	Y/N
Osa-miR160d	miRbase/PmiREN	/	Chr3	32454995	32455015	+	Y/N
osa-miR160d-3p	miRbase		Chr3	32455106	32455126	+	Y/N
Osa-miR162a	miRbase/PmiREN	/	Chr2	23605941	23605961	+	Y/N
Osa-miR164a	miRbase/PmiREN	/	Chr7	28523460	28523480	-	Y/N
Osa-miR164b	miRbase/PmiREN	/	Chr5	15896243	15896263	-	Y/N
Osa-miR166a	miRbase/PmiREN	/	Chr10	19987244	19987264	+	Y/N
Osa-miR166b	miRbase/PmiREN	/	Chr6	30327102	30327122	-	Y/N
osa-miR166c-3p	miRbase		Chr3	3487878	3487898	+	Y/N
osa-miR166d-5p	miRbase		Chr2	26130079	26130099	+	Y/N
Osa-miR166d	miRbase/PmiREN	/	Chr2	26130149	26130169	+	Y/N
osa-miR166e-3p	miRbase		Chr3	765831	765851	+	Y/N
Osa-miR166f	miRbase/PmiREN	/	Chr10	14483305	14483325	-	Y/N
Osa-miR167a	miRbase/PmiREN	/	Chr12	25476821	25476841	+	Y/N
osa-miR167a-3p	miRbase		Chr12	25476917	25476938	+	Y/N
Osa-miR167b	miRbase/PmiREN	/	Chr3	30547053	30547073	-	Y/N
Osa-miR167c	miRbase/PmiREN	/	Chr3	33130635	33130655	+	Y/N
osa-miR171a	miRbase		Chr6	25891198	25891218	+	Y/N
Osa-miR394	miRbase/PmiREN	/	Chr2	27148167	27148186	+	Y/N
osa-miR395b	miRbase		Chr4	31805344	31805364	-	Y/N
Osa-miR395d	miRbase/PmiREN	/	Chr4	31805065	31805085	-	Y/N
osa-miR395e	miRbase		Chr4	31804922	31804942	-	Y/N
osa-miR395g	miRbase		Chr4	31804643	31804663	-	Y/N
osa-miR395h	miRbase		Chr8	3299225	3299245	+	Y/N
Osa-miR395i	miRbase/PmiREN	/	Chr8	3299387	3299407	+	Y/N
osa-miR395j	miRbase		Chr8	3299560	3299580	+	Y/N
Osa-miR395k	miRbase/PmiREN	/	Chr8	3299720	3299740	+	Y/N
osa-miR395l	miRbase		Chr8	3300070	3300090	+	Y/N
Osa-miR395s	miRbase/PmiREN	/	Chr4	32622998	32623018	+	Y/N
osa-miR395c	miRbase		Chr4	31805203	31805223	-	Y/N
osa-miR395a	miRbase		Chr4	31805504	31805524	-	Y/N
Osa-miR396c	miRbase/PmiREN	/	Chr2	34287983	34288003	-	Y/N
osa-miR396c-3p	miRbase		Chr2	34287881	34287901	-	Y/N
osa-miR398a	miRbase		Chr10	9216260	9216280	-	Y/N
osa-miR399d	miRbase		Chr6	1562044	1562064	+	Y/N
Osa-miR399e	miRbase/PmiREN	/	Chr1	30477622	30477642	-	Y/N
Osa-miR399f	miRbase/PmiREN	/	Chr6	20888641	20888661	-	Y/N
Osa-miR399g	miRbase/PmiREN	/	Chr2	7675372	7675392	+	Y/N
Osa-miR399h	miRbase/PmiREN	/	Chr5	26308004	26308024	+	Y/N
Osa-miR399i	miRbase/PmiREN	/	Chr2	7650769	7650789	+	Y/N
osa-miR399j	miRbase		Chr4	28873196	28873216	+	Y/N
osa-miR156l-3p	miRbase		Chr5	5230735	5230756	+	Y/N
osa-miR159a.2	miRbase		Chr1	17682123	17682143	+	Y/N
osa-miR159a.1	miRbase		Chr1	17682164	17682184	+	Y/N
Osa-miR159b	miRbase/PmiREN	/	Chr1	1215187	1215207	+	Y/N
osa-miR159f	miRbase		Chr1	6693269	6693289	+	Y/N
osa-miR319a-5p	miRbase		Chr1	26823397	26823417	-	Y/N
osa-miR319a-3p	miRbase		Chr1	26823336	26823356	-	Y/N
osa-miR319a-3p.2-3p	miRbase		Chr1	26823292	26823311	-	Y/N
osa-miR319b	miRbase		Chr1	6677580	6677599	-	Y/N
Osa-miR160e	miRbase/PmiREN	/	Chr7	2216844	2216864	-	Y/N
osa-miR160e-3p	miRbase		Chr7	2216769	2216789	-	Y/N
Osa-miR160f	miRbase/PmiREN	/	Chr8	24396892	24396912	+	Y/N
osa-miR160f-3p	miRbase		Chr8	24396953	24396973	+	Y/N
Osa-miR162b	miRbase/PmiREN	/	Chr4	24406002	24406022	+	Y/N
Osa-miR164c	miRbase/PmiREN	/	Chr5	17327450	17327470	+	Y/N
osa-miR164d	miRbase		Chr2	33143630	33143650	-	Y/N
osa-miR166k-5p	miRbase		Chr2	32435097	32435117	-	Y/N
Osa-miR166k	miRbase/PmiREN	/	Chr2	32435013	32435033	-	Y/N
osa-miR166l-5p	miRbase		Chr9	16951829	16951849	+	Y/N
Osa-miR166l	miRbase/PmiREN	/	Chr9	16951903	16951923	+	Y/N
osa-miR167d-5p	miRbase		Chr7	4166374	4166394	-	Y/N
osa-miR167e-5p	miRbase		Chr2	3742483	3742503	-	Y/N
Osa-miR167e	miRbase/PmiREN	/	Chr2	3742249	3742269	-	Y/N
osa-miR167f	miRbase		Chr10	14723126	14723146	-	Y/N
osa-miR167g	miRbase		Chr3	3347692	3347712	+	Y/N
osa-miR167h-5p	miRbase		Chr12	25480628	25480648	+	Y/N
osa-miR167h-3p	miRbase		Chr12	25480709	25480729	+	Y/N
Osa-miR167i	miRbase/PmiREN	/	Chr6	27674759	27674779	+	Y/N
osa-miR167i-3p	miRbase		Chr6	27674921	27674941	+	Y/N
osa-miR168a-5p	miRbase		Chr2	1553210	1553230	-	Y/N
osa-miR168a-3p	miRbase		Chr2	1553162	1553185	-	Y/N
Osa-miR169b	miRbase/PmiREN	/	Chr6	27296005	27296025	-	Y/N
Osa-miR169c	miRbase/PmiREN	/	Chr4	30712419	30712439	-	Y/N
Osa-miR169e	miRbase/PmiREN	/	Chr2	31205967	31205987	-	Y/N
osa-miR169f.1	miRbase		Chr2	18558461	18558481	-	Y/N
Osa-miR169g	miRbase/PmiREN	/	Chr4	19420087	19420107	+	Y/N
osa-miR169i-3p	miRbase		Chr8	26803250	26803271	+	Y/N
osa-miR169p	miRbase		Chr8	7641421	7641442	-	Y/N
osa-miR169q	miRbase		Chr8	26817565	26817585	-	Y/N
Osa-miR171b	miRbase/PmiREN	/	Chr8	5369222	5369242	+	Y/N
osa-miR171c-5p	miRbase		Chr4	31713541	31713561	-	Y/N
Osa-miR171c	miRbase/PmiREN	/	Chr4	31713482	31713502	-	Y/N
Osa-miR171d	miRbase/PmiREN	/	Chr10	21237417	21237437	+	Y/N
osa-miR171e-5p	miRbase		Chr3	1970499	1970519	+	Y/N
Osa-miR171e	miRbase/PmiREN	/	Chr3	1970575	1970595	+	Y/N
Osa-miR171f	miRbase/PmiREN	/	Chr3	30027870	30027890	+	Y/N
Osa-miR172a	miRbase/PmiREN	/	Chr9	22881912	22881932	+	Y/N
osa-miR172b	miRbase		Chr1	42923746	42923766	-	Y/N
osa-miR166g-5p	miRbase		Chr12	18329381	18329401	+	Y/N
Osa-miR166g	miRbase/PmiREN	/	Chr12	18329481	18329501	+	Y/N
Osa-miR166h	miRbase/PmiREN	/	Chr2	32435184	32435204	-	Y/N
osa-miR166i-3p	miRbase		Chr3	25295067	25295087	+	Y/N
Osa-miR408	miRbase/PmiREN	/	Chr1	12301813	12301833	+	Y/N
Osa-miR172d	miRbase/PmiREN	/	Chr2	35143556	35143576	-	Y/N
osa-miR171i-5p	miRbase		Chr3	21191610	21191630	+	Y/N
osa-miR171i-3p	miRbase		Chr3	21191690	21191710	+	Y/N
osa-miR167j	miRbase		Chr1	32686182	32686202	-	Y/N
osa-miR166j-5p	miRbase		none	none	none	none	Y/N
osa-miR166j-3p	miRbase		none	none	none	none	Y/N
Osa-miR164f	miRbase/PmiREN	/	Chr5	23343931	23343951	+	Y/N
osa-miR435	miRbase		Chr3	18209546	18209565	+	Y/N
Osa-miR390	miRbase/PmiREN	/	Chr3	34275192	34275212	-	Y/N
osa-miR390-3p	miRbase		Chr3	34275156	34275175	-	Y/N
osa-miR439a	miRbase		Chr1	19880208	19880228	+	Y/N
osa-miR439b	miRbase		Chr10	5572957	5572977	+	Y/N
osa-miR439c	miRbase		Chr7	8233890	8233910	+	Y/N
osa-miR439d	miRbase		Chr3	13698381	13698401	+	Y/N
osa-miR439f	miRbase		Chr9	16963092	16963112	+	Y/N
osa-miR439g	miRbase		Chr8	3664291	3664311	+	Y/N
osa-miR439h	miRbase		Chr6	1553126	1553146	-	Y/N
Osa-miR440	miRbase/PmiREN	/	Chr11	9164827	9164850	-	Y/N
Osa-miR396e	miRbase/PmiREN	/	Chr4	34436832	34436852	+	Y/N
osa-miR396e-3p	miRbase		Chr4	34436971	34436994	+	Y/N
Osa-miR444a	miRbase/PmiREN	/	Chr8	20895018	20895040	+	Y/N
Osa-miR528	miRbase/PmiREN	/	Chr3	1667330	1667350	+	Y/N
osa-miR528-3p	miRbase		Chr3	1667395	1667415	+	Y/N
osa-miR529a	miRbase		Chr2	16227884	16227903	+	Y/N
osa-miR531a	miRbase		Chr8	1220398	1220421	-	Y/N
Osa-miR535	miRbase/PmiREN	/	Chr11	16290598	16290618	-	Y/N
osa-miR535-3p	miRbase		Chr11	16290533	16290553	-	Y/N
osa-miR395m	miRbase		Chr4	32622092	32622112	+	Y/N
Osa-miR395n	miRbase/PmiREN	/	Chr4	32622288	32622308	+	Y/N
Osa-miR395p	miRbase/PmiREN	/	Chr4	32622572	32622592	+	Y/N
osa-miR395q	miRbase		Chr4	32622715	32622735	+	Y/N
osa-miR395r	miRbase		none	none	none	none	Y/N
osa-miR810a	miRbase		none	none	none	none	Y/N
osa-miR814a	miRbase		Chr1	22375048	22375069	+	Y/N
osa-miR814b	miRbase		Chr2	26341222	26341243	+	Y/N
osa-miR814c	miRbase		Chr2	10889722	10889743	-	Y/N
osa-miR815a	miRbase		Chr5	29746690	29746710	+	Y/N
osa-miR820a	miRbase		Chr1	14130483	14130503	+	Y/N
osa-miR820b	miRbase		Chr7	13120705	13120725	-	Y/N
osa-miR820c	miRbase		Chr10	6928685	6928705	+	Y/N
osa-miR1423-5p	miRbase		Chr4	19715137	19715160	+	Y/N
osa-miR1423-3p	miRbase		Chr4	19715211	19715231	+	Y/N
Osa-miR1425	miRbase/PmiREN	/	Chr5	8862162	8862182	+	Y/N
osa-miR1425-3p	miRbase		Chr5	8862219	8862239	+	Y/N
Osa-miR1427	miRbase/PmiREN	/	Chr8	9192766	9192786	+	Y/N
osa-miR1428a-5p	miRbase		Chr1	13160785	13160805	+	Y/N
osa-miR1429-3p	miRbase		Chr8	2036954	2036974	-	Y/N
osa-miR169r-5p	miRbase		Chr3	35782429	35782449	+	Y/N
osa-miR169r-3p	miRbase		Chr3	35782501	35782521	+	Y/N
osa-miR444b.2	miRbase		none	none	none	none	Y/N
osa-miR444b.1	miRbase		none	none	none	none	Y/N
osa-miR444c.2	miRbase		none	none	none	none	Y/N
osa-miR444c.1	miRbase		none	none	none	none	Y/N
osa-miR444d.3	miRbase		none	none	none	none	Y/N
osa-miR444d.2	miRbase		none	none	none	none	Y/N
Osa-miR444e	miRbase/PmiREN	/	Chr8	20884829	20884851	+	Y/N
osa-miR810b.1	miRbase		Chr11	959633	959653	-	Y/N
osa-miR1436	miRbase		Chr1	20316606	20316626	-	Y/N
osa-miR1437a	miRbase		Chr8	3956048	3956069	+	Y/N
osa-miR531b	miRbase		Chr1	833970	833989	-	Y/N
Osa-miR1846d	miRbase/PmiREN	/	Chr1	39637075	39637096	+	Y/N
osa-miR1847.1	miRbase		Chr1	20332894	20332914	+	Y/N
osa-miR1849	miRbase		Chr4	22224878	22224898	+	Y/N
osa-miR1850.1	miRbase		Chr5	26275302	26275322	-	Y/N
osa-miR1850.2	miRbase		Chr5	26275277	26275297	-	Y/N
osa-miR1850.3	miRbase		Chr5	26275246	26275267	-	Y/N
osa-miR1851	miRbase		Chr5	26049753	26049773	+	Y/N
osa-miR1428e-5p	miRbase		Chr3	23076880	23076901	+	Y/N
Osa-miR1428e	miRbase/PmiREN	/	Chr3	23076951	23076971	+	Y/N
osa-miR1858a	miRbase		Chr9	13536656	13536676	+	Y/N
osa-miR1858b	miRbase		Chr9	13194082	13194102	+	Y/N
osa-miR1846a-5p	miRbase		Chr10	529306	529326	+	Y/N
osa-miR1846b-5p	miRbase		Chr11	27715881	27715901	-	Y/N
osa-miR1861a	miRbase		Chr1	15049794	15049815	+	Y/N
osa-miR1861c	miRbase		Chr2	20716196	20716217	+	Y/N
osa-miR1861d	miRbase		Chr4	6536354	6536375	+	Y/N
osa-miR1861e	miRbase		Chr4	6536571	6536592	+	Y/N
osa-miR1861g	miRbase		Chr5	18668633	18668654	+	Y/N
osa-miR1861k	miRbase		Chr8	15132584	15132605	-	Y/N
osa-miR1861m	miRbase		Chr9	13532666	13532687	+	Y/N
osa-miR1862a	miRbase		Chr1	26192362	26192385	+	Y/N
Osa-miR1862b	miRbase/PmiREN	/	Chr8	8341244	8341267	-	Y/N
Osa-miR1862c	miRbase/PmiREN	/	Chr10	16093939	16093962	+	Y/N
Osa-miR1864	miRbase/PmiREN	/	Chr2	14949079	14949104	-	Y/N
osa-miR1865-3p	miRbase		Chr3	34000704	34000727	+	Y/N
Osa-miR812f	miRbase/PmiREN	/	Chr4	13243647	13243672	+	Y/N
Osa-miR1871	miRbase/PmiREN	/	Chr6	13330544	13330569	+	Y/N
osa-miR1872	miRbase		Chr6	4923876	4923899	-	Y/N
osa-miR1873	miRbase		Chr7	12755926	12755949	+	Y/N
Osa-miR1875	miRbase/PmiREN	/	Chr9	17567956	17567981	-	Y/N
Osa-miR1862d	miRbase/PmiREN	/	Chr10	4833700	4833723	+	Y/N
Osa-miR1876	miRbase/PmiREN	/	Chr10	4833470	4833493	+	Y/N
Osa-miR1862e	miRbase/PmiREN	/	Chr11	2523291	2523314	+	Y/N
osa-miR1878	miRbase		Chr9	16555519	16555542	+	Y/N
osa-miR1879	miRbase		Chr10	5635431	5635454	+	Y/N
osa-miR1880	miRbase		Chr11	13959900	13959923	+	Y/N
osa-miR1881	miRbase		Chr12	5725959	5725982	+	Y/N
osa-miR812h	miRbase		Chr3	1164964	1164987	-	Y/N
Osa-miR812i	miRbase/PmiREN	/	Chr7	22152501	22152524	+	Y/N
Osa-miR812j	miRbase/PmiREN	/	Chr8	19806531	19806556	+	Y/N