RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 130

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR156d	miRbase		Chr2	4512974	4512993	-	Y/Y
Osa-miR156i	miRbase/PmiREN	/	Chr2	24120063	24120082	-	Y/Y
Osa-miR160a	miRbase/PmiREN	/	Chr2	3511649	3511669	-	Y/N
osa-miR160a-3p	miRbase		Chr2	3511586	3511606	-	Y/N
Osa-miR162a	miRbase/PmiREN	/	Chr2	23605941	23605961	+	Y/N
osa-miR166d-5p	miRbase		Chr2	26130079	26130099	+	Y/N
Osa-miR166d	miRbase/PmiREN	/	Chr2	26130149	26130169	+	Y/N
Osa-miR394	miRbase/PmiREN	/	Chr2	27148167	27148186	+	Y/N
Osa-miR396a	miRbase/PmiREN	/	Chr2	34280394	34280414	+	Y/Y
osa-miR396a-3p	miRbase		Chr2	34280509	34280528	+	Y/Y
Osa-miR396c	miRbase/PmiREN	/	Chr2	34287983	34288003	-	Y/N
osa-miR396c-3p	miRbase		Chr2	34287881	34287901	-	Y/N
osa-miR397b	miRbase		Chr2	3280868	3280888	-	Y/Y
Osa-miR399b	miRbase/PmiREN	/	Chr2	7664036	7664056	-	Y/Y
Osa-miR399g	miRbase/PmiREN	/	Chr2	7675372	7675392	+	Y/N
Osa-miR399i	miRbase/PmiREN	/	Chr2	7650769	7650789	+	Y/N
osa-miR164d	miRbase		Chr2	33143630	33143650	-	Y/N
osa-miR166k-5p	miRbase		Chr2	32435097	32435117	-	Y/N
Osa-miR166k	miRbase/PmiREN	/	Chr2	32435013	32435033	-	Y/N
osa-miR167e-5p	miRbase		Chr2	3742483	3742503	-	Y/N
Osa-miR167e	miRbase/PmiREN	/	Chr2	3742249	3742269	-	Y/N
osa-miR168a-5p	miRbase		Chr2	1553210	1553230	-	Y/N
osa-miR168a-3p	miRbase		Chr2	1553162	1553185	-	Y/N
osa-miR168b	miRbase		Chr2	27336438	27336458	+	N/N
Osa-miR169e	miRbase/PmiREN	/	Chr2	31205967	31205987	-	Y/N
osa-miR169f.2	miRbase		Chr2	18558482	18558502	-	Y/Y
osa-miR169f.1	miRbase		Chr2	18558461	18558481	-	Y/N
osa-miR166h-5p	miRbase		Chr2	32435260	32435280	-	Y/Y
Osa-miR166h	miRbase/PmiREN	/	Chr2	32435184	32435204	-	Y/N
osa-miR172d-5p	miRbase		Chr2	35143626	35143645	-	Y/Y
Osa-miR172d	miRbase/PmiREN	/	Chr2	35143556	35143576	-	Y/N
osa-miR418	miRbase		Chr2	35182642	35182662	-	N/N
osa-miR437	miRbase		Chr2	17050374	17050394	-	N/N
osa-miR529a	miRbase		Chr2	16227884	16227903	+	Y/N
osa-miR812b	miRbase		Chr2	1936332	1936353	-	N/N
osa-miR814b	miRbase		Chr2	26341222	26341243	+	Y/N
osa-miR814c	miRbase		Chr2	10889722	10889743	-	Y/N
osa-miR817	miRbase		Chr2	12276369	12276389	-	N/N
osa-miR818b	miRbase		Chr2	4007278	4007299	+	N/N
osa-miR818c	miRbase		Chr2	35928879	35928900	+	N/N
osa-miR1428c	miRbase		Chr2	2535117	2535137	+	N/N
Osa-miR1861b	miRbase/PmiREN	/	Chr2	20715979	20716000	+	Y/Y
osa-miR1861c	miRbase		Chr2	20716196	20716217	+	Y/N
osa-miR1863a	miRbase		Chr2	8522086	8522109	+	N/N
Osa-miR1864	miRbase/PmiREN	/	Chr2	14949079	14949104	-	Y/N
Osa-miR827	miRbase/PmiREN	/	Chr2	23901168	23901188	-	Y/N
osa-miR2094-5p	miRbase		Chr2	29779650	29779670	+	N/N
osa-miR2094-3p	miRbase		Chr2	29779679	29779700	+	Y/N
osa-miR396f-5p	miRbase		Chr2	35636693	35636714	-	Y/N
osa-miR396f-3p	miRbase		Chr2	35636554	35636577	-	Y/Y
osa-miR2106	miRbase		Chr2	23768619	23768639	-	Y/N
osa-miR2122	miRbase		Chr2	8715222	8715243	+	N/N
Osa-miR2863b	miRbase/PmiREN	/	Chr2	4195675	4195695	-	Y/N
osa-miR2879	miRbase		Chr2	18895917	18895940	-	Y/N
osa-miR396h	miRbase		Chr2	32841771	32841791	+	Y/Y
Osa-miR396d	miRbase/PmiREN	/	Chr2	27728695	27728715	-	Y/Y
osa-miR2928	miRbase		Chr2	6536024	6536043	+	N/N
Osa-miR2873b	miRbase/PmiREN	/	Chr2	18974876	18974896	+	N/N
osa-miR5147	miRbase		Chr2	17049866	17049886	-	Y/N
osa-miR2863c	miRbase		Chr2	29869574	29869597	+	Y/Y
osa-miR5340	miRbase		Chr2	5683388	5683410	-	Y/N
osa-miR5484	miRbase		Chr2	7796932	7796952	-	Y/N
osa-miR5493	miRbase		Chr2	22898270	22898290	+	Y/N
Osa-miR5495	miRbase/PmiREN	/	Chr2	20298341	20298363	+	N/N
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
Osa-miR5541	miRbase/PmiREN	/	Chr2	10239116	10239136	-	N/N
osa-miR5544	miRbase		Chr2	19335011	19335032	+	N/N
Osa-miR5179	miRbase/PmiREN	/	Chr2	12450920	12450940	+	Y/N
osa-miR6245	miRbase		Chr2	16647884	16647904	+	N/N
osa-miR11337-5p	miRbase		Chr2	27593846	27593866	+	N/N
osa-miR11337-3p	miRbase		Chr2	27593919	27593939	+	Y/N
osa-miR11338-5p	miRbase		Chr2	34890514	34890537	+	N/N
osa-miR11338-3p	miRbase		Chr2	34890601	34890624	+	Y/N
Osa-miR397b	PmiREN		Chr2	3280864	3280885	-	Y/Y
Osa-miRN2356	PmiREN		Chr2	20358270	20358290	-	N/N
Osa-miR1846h	PmiREN		Chr2	26544128	26544147	-	Y/N
Osa-miR818b	PmiREN		Chr2	4007276	4007301	+	N/N
Osa-miR818a	PmiREN		Chr2	28768227	28768250	+	Y/N
Osa-miRN2321	PmiREN		Chr2	10642797	10642817	+	N/Y
Osa-miRN2278	PmiREN		Chr2	20259532	20259552	+	Y/Y
Osa-miR11337r	PmiREN		Chr2	6143086	6143107	-	Y/N
Osa-miRN2268b	PmiREN		Chr2	10627710	10627730	+	Y/N
Osa-miR169f	PmiREN		Chr2	18558462	18558481	-	Y/N
Osa-miR3980a	PmiREN		Chr2	24319574	24319596	-	N/N
Osa-miR3980b	PmiREN		Chr2	24319574	24319596	-	N/N
Osa-miR529a	PmiREN		Chr2	16227807	16227827	+	Y/N
Osa-miR444b	PmiREN		Chr2	22303630	22303652	-	Y/N
Osa-miR444d	PmiREN		Chr2	30463327	30463349	-	Y/N
Osa-miR156d	PmiREN		Chr2	4512974	4512994	-	Y/Y
Osa-miR11343d	PmiREN		Chr2	1861077	1861098	-	Y/N
Osa-miRN2164d	PmiREN		Chr2	34255126	34255146	-	Y/N
Osa-miR812b	PmiREN		Chr2	1936345	1936370	-	Y/N
Osa-miR1122b	PmiREN		Chr2	977334	977354	-	N/N
Osa-miR2122	PmiREN		Chr2	8715263	8715286	+	N/N
Osa-miR2120	PmiREN		Chr2	9175883	9175908	+	N/N
Osa-miR531d	PmiREN		Chr2	18431799	18431820	+	Y/N
Osa-miRN2342	PmiREN		Chr2	18533094	18533114	+	N/N
Osa-miRN2341	PmiREN		Chr2	12299897	12299917	+	N/N
Osa-miR418	PmiREN		Chr2	35182640	35182663	-	N/N
Osa-miR164d	PmiREN		Chr2	33143631	33143650	-	Y/N
Osa-miRN2262	PmiREN		Chr2	31449188	31449207	+	Y/N
Osa-miRN2266	PmiREN		Chr2	720919	720939	+	Y/N
Osa-miR11337i	PmiREN		Chr2	32851465	32851485	-	Y/N
Osa-miR1428c	PmiREN		Chr2	2535131	2535153	+	N/N
Osa-miRN2322	PmiREN		Chr2	12296437	12296457	+	N/Y
Osa-miR10519	PmiREN		Chr2	21239830	21239853	-	Y/N
Osa-miRN2288	PmiREN		Chr2	1523682	1523702	+	N/Y
Osa-miR2863a	PmiREN		Chr2	29869574	29869597	+	Y/Y
Osa-miR2873d	PmiREN		Chr2	18373566	18373586	-	N/N
Osa-miR11339v	PmiREN		Chr2	6014598	6014619	-	N/N
Osa-miR11339ae	PmiREN		Chr2	19576181	19576201	+	N/N
Osa-miR2106	PmiREN		Chr2	23768618	23768641	-	Y/N
Osa-miR1861c	PmiREN		Chr2	20716240	20716262	+	Y/N
Osa-miR168	PmiREN		Chr2	1553210	1553230	-	Y/N
Osa-miR5788c	PmiREN		Chr2	27384263	27384283	-	Y/N
Osa-miR5788d	PmiREN		Chr2	15572963	15572983	-	Y/N
Osa-miR396f	PmiREN		Chr2	35636692	35636712	-	Y/N
Osa-miR812aj	PmiREN		Chr2	27756493	27756516	+	Y/N
Osa-miRN2276b	PmiREN		Chr2	23015418	23015438	-	Y/N
Osa-miR9777	PmiREN		Chr2	1797977	1797998	-	Y/N
Osa-miR5536	PmiREN		Chr2	19457533	19457553	+	N/N
Osa-miRN19	RiceNCexp		Chr2	4345573	4345594	+	N/N
Osa-miRN20	RiceNCexp		Chr2	18307627	18307646	-	N/N
Osa-miRN21	RiceNCexp		Chr2	18942099	18942118	-	N/N
Osa-miRN22	RiceNCexp		Chr2	24120061	24120081	-	Y/Y
Osa-miRN23	RiceNCexp		Chr2	25135004	25135024	-	Y/N
Osa-miRN24	RiceNCexp		Chr2	27148168	27148188	+	Y/N
Osa-miRN25	RiceNCexp		Chr2	31205965	31205984	-	Y/Y
Osa-miRN26	RiceNCexp		Chr2	34280395	34280414	+	Y/Y