Chr:
Chr2
Start:
31205967
End:
31205987
Strand:
-
Sequence:
UAGCCAAGGAUGACUUGCCGG
Length:
21
precursor sequence:
GAGGUGUAUUGCUGGUUGUGUAGCCAAGGAUGACUUGCCGGCCUGGUUUGUGUUCAUCAGCAAUCCAGCAUAUGCUGUAUUGCCGUGUGUGAUCGAUCGAUGCAUGGACCGGCAAGUUAUUUUCUUUGGCUACAUUACAACCUCGUCUUCUCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
18
NEP:
6.57%
LE_num:
LEP:
9.12%
ME_num:
MEP:
76.28%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
50.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -6.36979548857056 | 0.0139063317250757 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.48738265696874 | 0.0405418463912942 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.68344884498897 | 0.0354868197904588 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.0090042904307 | 0.0283842900796523 |