RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 111

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR167a	miRbase/PmiREN	/	Chr12	25476821	25476841	+	Y/N
osa-miR167a-3p	miRbase		Chr12	25476917	25476938	+	Y/N
osa-miR167h-5p	miRbase		Chr12	25480628	25480648	+	Y/N
osa-miR167h-3p	miRbase		Chr12	25480709	25480729	+	Y/N
osa-miR166g-5p	miRbase		Chr12	18329381	18329401	+	Y/N
Osa-miR166g	miRbase/PmiREN	/	Chr12	18329481	18329501	+	Y/N
osa-miR413	miRbase		Chr12	10136385	10136405	+	N/N
osa-miR415	miRbase		Chr12	26270580	26270600	-	N/N
osa-miR419	miRbase		Chr12	8237586	8237606	-	N/N
osa-miR1430	miRbase		Chr12	6825025	6825045	-	Y/Y
osa-miR1441	miRbase		Chr12	19485761	19485781	-	N/N
osa-miR1439	miRbase		Chr12	10074240	10074260	+	N/N
osa-miR1861n	miRbase		Chr12	16586629	16586650	-	Y/Y
osa-miR1881	miRbase		Chr12	5725959	5725982	+	Y/N
Osa-miR1882h	miRbase/PmiREN	/	Chr12	21511554	21511577	+	N/N
Osa-miR1846c	miRbase/PmiREN	/	Chr12	270799	270819	+	Y/N
osa-miR1846c-3p	miRbase		Chr12	270828	270848	+	N/N
osa-miR2091-5p	miRbase		Chr12	19403429	19403449	-	N/N
osa-miR2091-3p	miRbase		Chr12	19403378	19403399	-	N/N
osa-miR2092-5p	miRbase		Chr12	10116332	10116352	+	Y/N
osa-miR2092-3p	miRbase		Chr12	10116401	10116422	+	Y/N
osa-miR2101-5p	miRbase		Chr12	17986700	17986721	+	N/N
osa-miR2101-3p	miRbase		Chr12	17986766	17986787	+	N/Y
osa-miR2103	miRbase		Chr12	16852607	16852628	-	N/N
osa-miR2105	miRbase		Chr12	4602492	4602511	+	N/N
osa-miR2864.1	miRbase		Chr12	25664791	25664811	-	N/Y
osa-miR2864.2	miRbase		Chr12	25664780	25664800	-	Y/N
osa-miR1863c	miRbase		Chr12	4869465	4869488	+	Y/Y
osa-miR1863b	miRbase		Chr12	4867560	4867583	+	N/N
osa-miR1863b.2	miRbase		Chr12	4867585	4867607	+	Y/N
osa-miR2907d	miRbase		Chr12	12115126	12115147	+	N/N
osa-miR5074	miRbase		Chr12	12674526	12674546	+	N/N
osa-miR5160	miRbase		Chr12	2039483	2039504	-	N/N
Osa-miR5161	miRbase/PmiREN	/	Chr12	12083796	12083817	+	N/N
osa-miR5162	miRbase		Chr12	16421208	16421231	+	N/N
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5503	miRbase/PmiREN	/	Chr12	5657913	5657934	+	N/N
Osa-miR5505	miRbase/PmiREN	/	Chr12	13389180	13389203	+	N/N
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
osa-miR5510	miRbase		Chr12	19128008	19128028	-	N/N
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5535	miRbase		Chr12	12446271	12446292	-	N/N
osa-miR5539a	miRbase		Chr12	20548938	20548959	-	N/N
osa-miR5791	miRbase		Chr12	24374520	24374540	+	N/Y
Osa-miR5801a	miRbase/PmiREN	/	Chr12	19318259	19318284	-	N/N
osa-miR5805	miRbase		Chr12	13821863	13821886	-	Y/N
osa-miR5810	miRbase		Chr12	7333302	7333325	-	N/N
osa-miR5821	miRbase		Chr12	24605434	24605454	+	N/N
osa-miR5832	miRbase		Chr12	21169058	21169078	+	N/N
osa-miR6252	miRbase		Chr12	18110554	18110576	-	N/N
osa-miR6254	miRbase		Chr12	1970872	1970892	+	N/N
osa-miR7693-5p	miRbase		Chr12	25875300	25875323	-	N/N
osa-miR7693-3p	miRbase		Chr12	25875198	25875219	-	Y/N
osa-miR5539b	miRbase		Chr12	20553832	20553853	-	N/N
osa-miR11343-5p	miRbase		Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase		Chr12	16169071	16169091	-	N/N
osa-miR6245b-5p	miRbase		Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase		Chr12	12892477	12892497	-	N/N
Osa-miRN2232j	PmiREN		Chr12	25611723	25611743	+	Y/N
Osa-miRN2354	PmiREN		Chr12	24297192	24297212	+	Y/N
Osa-miRN2351	PmiREN		Chr12	24395829	24395849	-	N/Y
Osa-miRN2352	PmiREN		Chr12	18628386	18628406	-	N/N
Osa-miR11337q	PmiREN		Chr12	4776554	4776575	-	Y/N
Osa-miR5801d	PmiREN		Chr12	1024710	1024729	+	Y/N
Osa-miR5801q	PmiREN		Chr12	8866352	8866371	+	N/N
Osa-miRN2268a	PmiREN		Chr12	22206661	22206681	-	Y/N
Osa-miR11343a	PmiREN		Chr12	16169140	16169160	+	Y/N
Osa-miRN2178a	PmiREN		Chr12	19677360	19677380	+	Y/N
Osa-miRN2178b	PmiREN		Chr12	25472900	25472920	+	Y/N
Osa-miRN2267b	PmiREN		Chr12	14534590	14534610	+	N/Y
Osa-miRN221a	PmiREN		Chr12	11288156	11288175	-	Y/N
Osa-miRN2232i	PmiREN		Chr12	24283404	24283424	-	Y/Y
Osa-miRN2313	PmiREN		Chr12	21182132	21182152	-	N/Y
Osa-miRN2222	PmiREN		Chr12	13410165	13410185	+	Y/Y
Osa-miRN221b	PmiREN		Chr12	5611048	5611067	-	Y/N
Osa-miRN2319	PmiREN		Chr12	24317901	24317921	+	Y/Y
Osa-miRN2164a	PmiREN		Chr12	18944486	18944506	-	Y/N
Osa-miRN2317	PmiREN		Chr12	21907561	21907581	-	N/Y
Osa-miR5821a	PmiREN		Chr12	24605434	24605454	+	N/N
Osa-miRN2353	PmiREN		Chr12	18625651	18625671	+	N/N
Osa-miRN2263	PmiREN		Chr12	2361885	2361905	+	Y/N
Osa-miRN2337	PmiREN		Chr12	21000978	21000998	+	N/Y
Osa-miR1863	PmiREN		Chr12	4869464	4869489	+	Y/Y
Osa-miR167h	PmiREN		Chr12	25480628	25480649	+	Y/N
Osa-miR11337b	PmiREN		Chr12	7127106	7127126	+	Y/N
Osa-miRN2283d	PmiREN		Chr12	26412030	26412050	+	N/N
Osa-miRN2279	PmiREN		Chr12	26345196	26345216	-	Y/N
Osa-miR11339q	PmiREN		Chr12	16041754	16041774	-	Y/N
Osa-miRN2272	PmiREN		Chr12	22069226	22069246	-	N/Y
Osa-miR1441	PmiREN		Chr12	19485783	19485808	-	Y/N
Osa-miRN2232g	PmiREN		Chr12	18328189	18328209	+	Y/N
Osa-miR1861g	PmiREN		Chr12	16586413	16586433	-	Y/Y
Osa-miRN2338	PmiREN		Chr12	22033257	22033277	+	N/Y
Osa-miRN2339	PmiREN		Chr12	24831791	24831811	+	N/Y
Osa-miRN2295	PmiREN		Chr12	24290567	24290587	+	N/Y
Osa-miRN2297	PmiREN		Chr12	21727741	21727761	-	N/Y
Osa-miRN2296	PmiREN		Chr12	24862194	24862214	+	Y/Y
Osa-miR812ai	PmiREN		Chr12	24677388	24677411	+	Y/N
Osa-miRN2299	PmiREN		Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN		Chr12	16207990	16208010	+	N/Y
Osa-miR1430	PmiREN		Chr12	6825111	6825133	-	Y/N
Osa-miR11339i	PmiREN		Chr12	22138563	22138586	+	N/N
Osa-miRN2369	PmiREN		Chr12	14944232	14944252	+	N/Y
Osa-miRN2318	PmiREN		Chr12	7555497	7555517	+	N/N
Osa-miRN67	RiceNCexp		Chr12	1970855	1970876	+	N/N
Osa-miRN68	RiceNCexp		Chr12	3611887	3611908	+	N/N
Osa-miRN69	RiceNCexp		Chr12	8866347	8866367	+	Y/N
Osa-miRN70	RiceNCexp		Chr12	9499637	9499656	-	N/N
Osa-miRN71	RiceNCexp		Chr12	18329479	18329500	+	Y/N