RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 76

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156g	miRbase/PmiREN	/	Chr9	15065256	15065275	+	Y/Y
osa-miR156g-3p	miRbase		Chr9	15065346	15065367	+	Y/Y
osa-miR395t	miRbase		Chr9	6607363	6607383	-	N/N
osa-miR395u	miRbase		Chr9	6606711	6606731	-	N/N
osa-miR156k	miRbase		Chr9	18289182	18289202	-	N/N
osa-miR166l-5p	miRbase		Chr9	16951829	16951849	+	Y/N
Osa-miR166l	miRbase/PmiREN	/	Chr9	16951903	16951923	+	Y/N
Osa-miR169d	miRbase/PmiREN	/	Chr9	14620454	14620474	-	N/N
Osa-miR169j	miRbase/PmiREN	/	Chr9	19788871	19788891	+	Y/Y
Osa-miR169k	miRbase/PmiREN	/	Chr9	19792143	19792163	+	Y/Y
Osa-miR172a	miRbase/PmiREN	/	Chr9	22881912	22881932	+	Y/N
osa-miR439f	miRbase		Chr9	16963092	16963112	+	Y/N
osa-miR395v	miRbase		Chr9	6606575	6606595	-	N/N
osa-miR395w	miRbase		Chr9	6606291	6606312	-	N/N
osa-miR1440a	miRbase		Chr9	5980666	5980685	-	N/N
osa-miR1858a	miRbase		Chr9	13536656	13536676	+	Y/N
osa-miR1858b	miRbase		Chr9	13194082	13194102	+	Y/N
Osa-miR1861l	miRbase/PmiREN	/	Chr9	13532448	13532469	+	Y/Y
osa-miR1861m	miRbase		Chr9	13532666	13532687	+	Y/N
Osa-miR1875	miRbase/PmiREN	/	Chr9	17567956	17567981	-	Y/N
Osa-miR1877	miRbase/PmiREN	/	Chr9	21044089	21044112	+	Y/Y
osa-miR1878	miRbase		Chr9	16555519	16555542	+	Y/N
osa-miR2055	miRbase		Chr9	431438	431458	-	N/N
osa-miR1846e	miRbase		Chr9	13211477	13211496	-	Y/N
Osa-miR2865	miRbase/PmiREN	/	Chr9	8515762	8515785	-	Y/N
Osa-miR5491	miRbase/PmiREN	/	Chr9	6896428	6896448	+	N/N
osa-miR5524	miRbase		Chr9	3278307	3278327	+	N/N
osa-miR5525	miRbase		Chr9	3904488	3904509	-	Y/N
osa-miR5536	miRbase		Chr9	9140172	9140193	-	Y/N
osa-miR5795	miRbase		Chr9	11103946	11103967	-	Y/N
osa-miR5801b	miRbase		Chr9	18739256	18739279	+	Y/N
osa-miR5816	miRbase		Chr9	11584062	11584085	-	Y/N
osa-miR1440b	miRbase		Chr9	5980663	5980683	+	N/N
Osa-miR6251	miRbase/PmiREN	/	Chr9	15792347	15792367	+	N/N
osa-miR11341-5p	miRbase		Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase		Chr9	22895229	22895252	+	Y/N
Osa-miRN2232d	PmiREN		Chr9	6711930	6711950	-	Y/N
Osa-miRN2332	PmiREN		Chr9	8961276	8961296	-	N/N
Osa-miR1846e	PmiREN		Chr9	13211472	13211495	-	Y/N
Osa-miR11337p	PmiREN		Chr9	15244712	15244732	+	Y/N
Osa-miR1878	PmiREN		Chr9	16555575	16555598	+	Y/N
Osa-miRN2232f	PmiREN		Chr9	5670106	5670126	-	Y/N
Osa-miRN2298b	PmiREN		Chr9	11105872	11105892	-	Y/N
Osa-miR156k	PmiREN		Chr9	18289183	18289202	-	N/N
Osa-miR11343c	PmiREN		Chr9	22883315	22883336	-	N/N
Osa-miR812t	PmiREN		Chr9	16214838	16214859	+	Y/N
Osa-miR812s	PmiREN		Chr9	8642575	8642596	-	Y/N
Osa-miRN2349	PmiREN		Chr9	6623796	6623816	+	N/Y
Osa-miRN2264	PmiREN		Chr9	13604993	13605013	+	N/Y
Osa-miRN2230	PmiREN		Chr9	13753101	13753122	+	Y/N
Osa-miR11341	PmiREN		Chr9	22895230	22895251	-	Y/N
Osa-miRN2330	PmiREN		Chr9	9298242	9298262	+	N/Y
Osa-miRN2373d	PmiREN		Chr9	11323120	11323140	+	N/N
Osa-miRN2331	PmiREN		Chr9	9324615	9324635	+	N/Y
Osa-miRN2308	PmiREN		Chr9	8761068	8761088	+	N/Y
Osa-miRN45b	PmiREN		Chr9	11946580	11946599	-	Y/N
Osa-miR5795a	PmiREN		Chr9	11103946	11103967	-	Y/N
Osa-miR11339f	PmiREN		Chr9	7974442	7974462	-	N/N
Osa-miR11339g	PmiREN		Chr9	7233194	7233214	-	N/N
Osa-miR11339n	PmiREN		Chr9	8881628	8881648	-	N/N
Osa-miR11339o	PmiREN		Chr9	915192	915212	-	N/N
Osa-miR439f	PmiREN		Chr9	16963079	16963102	+	N/N
Osa-miRN2277	PmiREN		Chr9	6620328	6620348	+	N/N
Osa-miRN2164g	PmiREN		Chr9	1319732	1319752	+	Y/N
Osa-miRN2323c	PmiREN		Chr9	15088792	15088812	-	N/Y
Osa-miR395t	PmiREN		Chr9	6607390	6607412	-	N/N
Osa-miR1861k	PmiREN		Chr9	13532666	13532686	+	Y/N
Osa-miR5788f	PmiREN		Chr9	11842898	11842918	+	Y/N
Osa-miRN2294	PmiREN		Chr9	9174506	9174526	+	N/Y
Osa-miRN2291	PmiREN		Chr9	8969545	8969565	+	Y/Y
Osa-miRN51	RiceNCexp		Chr9	3969825	3969845	+	N/N
Osa-miRN52	RiceNCexp		Chr9	8126542	8126561	-	N/Y
Osa-miRN53	RiceNCexp		Chr9	13552789	13552809	+	N/N
Osa-miRN54	RiceNCexp		Chr9	18289181	18289201	-	N/N
Osa-miRN55	RiceNCexp		Chr9	19647846	19647866	-	N/N
Osa-miRN56	RiceNCexp		Chr9	19792262	19792282	+	Y/Y