Chr:
Chr6
Start:
25891198
End:
25891218
Strand:
+
Sequence:
UGAUUGAGCCGCGCCAAUAUC
Length:
21
precursor sequence:
GGAAAGAGCGAUAUUGGUGAGGUUCAAUCCGAUGAUUGGUUUUACAGCAGUGGUAAAAUCAGUAUCUGAUUGAGCCGCGCCAAUAUCUCUUCCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
47
NEP:
17.15%
LE_num:
LEP:
18.61%
ME_num:
MEP:
56.2%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
lamina_joint
Tau :
0.86
Avg Expression:
21.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.41669155152754 | 0.0185808344428553 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.92722110673196 | 0.00437855918188493 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.44592671853322 | 0.011643957233244 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.78975440574818 | 3.17035774302105e-05 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.39741843050874 | 0.00684320187614469 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.18568398330622 | 0.0166505342029446 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.73636836006009 | 0.000607063945305531 |