RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 110

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR160d	miRbase/PmiREN	/	Chr3	32454995	32455015	+	Y/N
osa-miR160d-3p	miRbase		Chr3	32455106	32455126	+	Y/N
osa-miR166c-5p	miRbase		Chr3	3487799	3487818	+	Y/Y
osa-miR166c-3p	miRbase		Chr3	3487878	3487898	+	Y/N
Osa-miR166e	miRbase/PmiREN	/	Chr3	765735	765755	+	Y/Y
osa-miR166e-3p	miRbase		Chr3	765831	765851	+	Y/N
Osa-miR167b	miRbase/PmiREN	/	Chr3	30547053	30547073	-	Y/N
Osa-miR167c	miRbase/PmiREN	/	Chr3	33130635	33130655	+	Y/N
osa-miR167c-3p	miRbase		Chr3	33130741	33130763	+	Y/Y
Osa-miR164e	miRbase/PmiREN	/	Chr3	10542167	10542187	+	Y/Y
osa-miR167g	miRbase		Chr3	3347692	3347712	+	Y/N
osa-miR171e-5p	miRbase		Chr3	1970499	1970519	+	Y/N
Osa-miR171e	miRbase/PmiREN	/	Chr3	1970575	1970595	+	Y/N
osa-miR171f-5p	miRbase		Chr3	30027786	30027806	+	Y/Y
Osa-miR171f	miRbase/PmiREN	/	Chr3	30027870	30027890	+	Y/N
osa-miR166i-5p	miRbase		Chr3	25294967	25294987	+	N/N
osa-miR166i-3p	miRbase		Chr3	25295067	25295087	+	Y/N
osa-miR171i-5p	miRbase		Chr3	21191610	21191630	+	Y/N
osa-miR171i-3p	miRbase		Chr3	21191690	21191710	+	Y/N
osa-miR435	miRbase		Chr3	18209546	18209565	+	Y/N
Osa-miR390	miRbase/PmiREN	/	Chr3	34275192	34275212	-	Y/N
osa-miR390-3p	miRbase		Chr3	34275156	34275175	-	Y/N
osa-miR439d	miRbase		Chr3	13698381	13698401	+	Y/N
osa-miR443	miRbase		Chr3	30021486	30021507	+	N/N
Osa-miR528	miRbase/PmiREN	/	Chr3	1667330	1667350	+	Y/N
osa-miR528-3p	miRbase		Chr3	1667395	1667415	+	Y/N
osa-miR821a	miRbase		Chr3	22974239	22974262	+	N/N
osa-miR169r-5p	miRbase		Chr3	35782429	35782449	+	Y/N
osa-miR169r-3p	miRbase		Chr3	35782501	35782521	+	Y/N
osa-miR1428d	miRbase		Chr3	23077356	23077376	+	N/N
osa-miR1428e-5p	miRbase		Chr3	23076880	23076901	+	Y/N
Osa-miR1428e	miRbase/PmiREN	/	Chr3	23076951	23076971	+	Y/N
osa-miR1865-5p	miRbase		Chr3	34000604	34000627	+	N/N
osa-miR1865-3p	miRbase		Chr3	34000704	34000727	+	Y/N
Osa-miR1866	miRbase/PmiREN	/	Chr3	6510880	6510903	+	Y/Y
osa-miR1866-3p	miRbase		Chr3	6510921	6510942	+	Y/Y
Osa-miR1882a	miRbase/PmiREN	/	Chr3	18923970	18923993	-	N/N
Osa-miR812g	miRbase/PmiREN	/	Chr3	5230185	5230208	+	N/N
osa-miR812h	miRbase		Chr3	1164964	1164987	-	Y/N
osa-miR2863a	miRbase		Chr3	27108349	27108369	+	Y/N
osa-miR2866	miRbase		Chr3	7331671	7331690	-	N/N
osa-miR2905	miRbase		Chr3	13591904	13591924	-	Y/N
Osa-miR2880	miRbase/PmiREN	/	Chr3	22741628	22741651	+	Y/Y
osa-miR2907a	miRbase		Chr3	23598586	23598607	+	N/N
osa-miR5077	miRbase		Chr3	14094764	14094782	+	N/N
Osa-miR5148a	miRbase/PmiREN	/	Chr3	9968955	9968980	-	Y/N
osa-miR5149	miRbase		Chr3	29756528	29756549	-	Y/N
osa-miR5485	miRbase		Chr3	22088162	22088182	-	N/N
Osa-miR5486	miRbase/PmiREN	/	Chr3	26838901	26838921	+	Y/N
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
Osa-miR5513	miRbase/PmiREN	/	Chr3	34008118	34008138	+	Y/N
osa-miR5531	miRbase		Chr3	10288543	10288564	+	N/N
osa-miR5788	miRbase		Chr3	30006963	30006983	+	Y/N
osa-miR812s	miRbase		Chr3	6033241	6033264	-	Y/N
osa-miR5811	miRbase		Chr3	13198037	13198060	-	N/N
osa-miR1319b	miRbase		Chr3	23399924	23399947	+	N/N
osa-miR6246	miRbase		Chr3	1625448	1625470	+	Y/N
osa-miR6248	miRbase		Chr3	32572995	32573015	-	Y/N
osa-miR5337b	miRbase		Chr3	35885491	35885511	-	N/N
osa-miR6249a	miRbase		Chr3	744670	744690	-	Y/N
Osa-miR6256	miRbase/PmiREN	/	Chr3	1235636	1235659	-	N/N
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miR11337s	PmiREN		Chr3	31459681	31459702	-	Y/N
Osa-miR5801m	PmiREN		Chr3	1824711	1824731	-	N/N
Osa-miR169a	PmiREN		Chr3	35782429	35782449	+	Y/N
Osa-miRN2232a	PmiREN		Chr3	27624400	27624420	+	Y/N
Osa-miRN2232h	PmiREN		Chr3	24510613	24510633	-	Y/N
Osa-miRN221c	PmiREN		Chr3	31819312	31819331	-	Y/N
Osa-miR11343e	PmiREN		Chr3	2591086	2591107	-	N/N
Osa-miR812d	PmiREN		Chr3	26459657	26459676	+	Y/N
Osa-miR812e	PmiREN		Chr3	14377303	14377322	-	Y/N
Osa-miR812h	PmiREN		Chr3	1164963	1164986	-	Y/N
Osa-miRN2344	PmiREN		Chr3	27635975	27635995	+	N/N
Osa-miRN2343	PmiREN		Chr3	26841668	26841688	+	N/Y
Osa-miRN2357	PmiREN		Chr3	32294553	32294573	+	N/N
Osa-miRN2358	PmiREN		Chr3	32278135	32278155	-	N/Y
Osa-miR1865	PmiREN		Chr3	34000705	34000726	+	Y/N
Osa-miR167g	PmiREN		Chr3	3347692	3347713	+	Y/N
Osa-miR11337j	PmiREN		Chr3	32923087	32923107	+	Y/N
Osa-miR11337k	PmiREN		Chr3	4737493	4737513	-	Y/N
Osa-miR1428d	PmiREN		Chr3	23077370	23077392	+	N/N
Osa-miR5809a	PmiREN		Chr3	7799985	7800005	+	Y/N
Osa-miR170	PmiREN		Chr3	21191693	21191713	+	Y/N
Osa-miR1130	PmiREN		Chr3	24748148	24748167	+	N/N
Osa-miRN2195b	PmiREN		Chr3	26422902	26422922	-	N/N
Osa-miRN2195c	PmiREN		Chr3	7617391	7617411	-	N/N
Osa-miR2873e	PmiREN		Chr3	32963518	32963538	-	N/N
Osa-miRN2374	PmiREN		Chr3	26834061	26834081	+	N/N
Osa-miR5337b	PmiREN		Chr3	35885492	35885511	-	N/N
Osa-miR11339w	PmiREN		Chr3	11400500	11400521	-	N/N
Osa-miR1862f	PmiREN		Chr3	29954038	29954057	+	N/Y
Osa-miRN2273	PmiREN		Chr3	32487508	32487528	+	Y/Y
Osa-miR11339af	PmiREN		Chr3	5460796	5460816	+	N/N
Osa-miR5485	PmiREN		Chr3	22088085	22088105	-	Y/N
Osa-miR5788e	PmiREN		Chr3	4209193	4209213	+	Y/N
Osa-miRN2323a	PmiREN		Chr3	23448549	23448569	+	N/Y
Osa-miR5788a	PmiREN		Chr3	30006963	30006983	+	Y/N
Osa-miR812af	PmiREN		Chr3	1453547	1453570	-	Y/N
Osa-miR812ae	PmiREN		Chr3	17638738	17638761	+	Y/Y
Osa-miR812ac	PmiREN		Chr3	16194432	16194455	-	Y/N
Osa-miR166c	PmiREN		Chr3	3487877	3487897	+	Y/N
Osa-miR166j	PmiREN		Chr3	30392799	30392819	-	Y/N
Osa-miR166i	PmiREN		Chr3	25295065	25295085	+	Y/N
Osa-miR812ah	PmiREN		Chr3	35561723	35561746	-	Y/Y
Osa-miR11339j	PmiREN		Chr3	11025951	11025972	-	N/N
Osa-miRN27	RiceNCexp		Chr3	22088085	22088104	-	N/N
Osa-miRN28	RiceNCexp		Chr3	25574715	25574736	+	N/N
Osa-miRN29	RiceNCexp		Chr3	31059086	31059106	-	N/Y
Osa-miRN30	RiceNCexp		Chr3	32454996	32455015	+	Y/N
Osa-miRN31	RiceNCexp		Chr3	33130637	33130656	+	N/Y