Chr:
Chr3
Start:
1667330
End:
1667350
Strand:
+
Sequence:
UGGAAGGGGCAUGCAGAGGAG
Length:
21
precursor sequence:
UUUGGCUGUAGCAGCAGCAGUGGAAGGGGCAUGCAGAGGAGCAGGAGAUUCAGUUUGAAGCUGGACUUCACUUUUGCCUCUCUCUCCUGUGCUUGCCUCUUCCAUUCCUGCUGCUAGGCUGUUCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
7
NEP:
2.55%
LE_num:
LEP:
0.36%
ME_num:
MEP:
26.28%
HE_num:
HEP:
70.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
4549.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.54257116913208 | 0.000781608816774405 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.97887209563633 | 0.00644111765369294 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.20866049323123 | 3.82026073727796e-09 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.42945273152897 | 0.00218494905649861 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -2.49803153358278 | 4.79738399151903e-07 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.61752395951319 | 0.00983285697535256 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.44881180926898 | 4.19810714847091e-09 |
| 8 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.59090071333719 | 8.69127606559121e-07 |