RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR399f_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

20888641

End:

20888661

Strand:

-

Sequence:

UGCCAAAGGAGAUUUGCCCAG

Length:

21

precursor sequence:

CUUGCGAGUGGUGGAUUACCGGGCCAUGUCUCCUUGGGCAGAGGUGAUCAGAUUGCACACUUCACUUCAACCUCUUGCUCUAGCUUGUUCUCUCUGCCAAAGGAGAUUUGCCCAGCAAUCCACAUUUGCAAUUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

179

NEP:

65.33%

LE_num:

63

LEP:

22.99%

ME_num:

32

MEP:

11.68%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf

Tau :

0.85

Avg Expression:

0.49

Tip: Osa-miR399f_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1)-6.243904111997280.0104312892338796
2PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2)-6.291372876833160.0213421486438906