Chr:
Chr9
Start:
16951903
End:
16951923
Strand:
+
Sequence:
UCGGACCAGGCUUCAAUCCCU
Length:
21
precursor sequence:
AGGCUGAAGUUAGGUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACCAGCAUCUGCACAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
0.36%
ME_num:
MEP:
4.01%
HE_num:
HEP:
95.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.78
Avg Expression:
2775.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | 1.56527229197663 | 0.0248349300566054 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.02325535367418 | 3.60803945865002e-10 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.46586574800472 | 2.34346314575216e-44 |
| 4 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -1.32497947453223 | 0.00958893706289992 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.26873882229023 | 8.75826408174535e-42 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.18275152225929 | 0.00392577009015942 |