Chr:
Chr8
Start:
8341244
End:
8341267
Strand:
-
Sequence:
ACGAGGUUGGUUUAUUUUGGGACG
Length:
24
precursor sequence:
CAGUGCGCCUACUCCCUUAGUCCCAAAAUAAAUUAAUCUUAUACAAGAUUUGGCACAUCAUAGUACUACGAAUCUGGAUAUACUAGGAUGUGUCACAUUCCGUACGAGGUUGGUUUAUUUUGGGACGGAGGGAGGGAGUAUCUCGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
2.19%
ME_num:
MEP:
43.43%
HE_num:
HEP:
53.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.74
Avg Expression:
111.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.46524148890544 | 0.00025822413727195 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.70185261548437 | 4.30082455623839e-05 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.6871354387776 | 0.00725109247291928 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.67176171648428 | 0.0414218864136123 |
| 5 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.33276320654878 | 7.71533651320562e-09 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.0695414839379 | 1.7624162737524e-05 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.98636790625433 | 3.94542571732091e-09 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.37547689759935 | 2.65295194569257e-11 |