| SRR2154070 | seed | Guangluai4_seed | 15.56 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 39.37 | HC |
| SRR6810106 | panicle | panicle | 6.25 | HC |
| SRR7058097 | leaf | rice_mock | 131.33 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 16.86 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 7.82 | HC |
| SRR7058098 | leaf | rice_RSV | 98.18 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 129.25 | HC |
| SRR2154077 | seedling | KDM105_seedling | 255.43 | HC |
| SRR2154074 | seed | Nipponbare_seed | 59.34 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 36.36 | HC |
| SRR2154071 | seed | KDM105_seed | 57.86 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 6.34 | HC |
| SRR1061624 | panicle | Normal | 14.84 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 41.14 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 120.32 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 331.68 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 363.72 | HC |
| SRR1013787 | panicle | PA64s_PA | 31.42 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 19.65 | HC |
| SRR1013788 | panicle | LYP9_PA | 27.96 | HC |
| SRR9070101 | shoot_base | WT_base | 5.43 | HC |
| SRR089619 | panicle | control | 11.55 | HC |
| SRR1849765 | leaf | Control 30min | 88.31 | HC |
| SRR1849767 | leaf | Control 30min | 62.11 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 87.48 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 14.49 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 279.98 | HC |
| SRR6498701 | leaf | "WT, Control" | 206.12 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 244.19 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 24.88 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 188.24 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 28.15 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 19.83 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 17.57 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 34.02 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 10.70 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 14.38 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 34.18 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 18.59 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 19.85 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 32.96 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 27.48 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 113.77 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 101.20 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 105.14 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 32.80 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 59.73 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 80.38 | HC |
| SRR1849773 | leaf | Control 120min | 78.49 | HC |
| SRR1849772 | leaf | Control 120min | 80.60 | HC |
| SRR1849771 | leaf | Control 120min | 72.11 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 71.20 | HC |
| SRR7058096 | leaf | rice_mock | 212.74 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 39.82 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 94.98 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 659.81 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 60.09 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 56.20 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 44.85 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 97.43 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 95.01 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 71.68 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 53.40 | HC |
| SRR2154075 | seed | Taipei309_seed | 66.14 | HC |
| SRR976171 | lamina_joint | wild type | 31.66 | HC |
| SRR4098208 | root | No treatment | 13.26 | HC |
| SRR4098209 | leaf | No treatment | 16.36 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 77.29 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 74.51 | HC |
| SRR9070100 | shoot_base | WT_base | 6.25 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 31.28 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 66.97 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 104.92 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 124.14 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 91.34 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 66.07 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 21.82 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 20.00 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 8.30 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 11.66 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 5.82 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 6.97 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 84.09 | HC |
| SRR2862364 | leaf | mock leaf cells | 39.43 | HC |
| SRR2862365 | leaf | mock leaf cells | 45.90 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 122.99 | HC |
| SRR2862363 | leaf | mock leaf cells | 135.69 | HC |
| SRR8649147 | panicle | panicle tissue | 271.11 | HC |
| SRR10704055 | leaf | CK | 25.04 | HC |
| SRR10704057 | leaf | CK | 27.98 | HC |
| SRR10704056 | leaf | CK | 25.94 | HC |
| SRR10704059 | leaf | Glyphosate | 35.86 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 56.39 | HC |
| SRR9070102 | shoot_base | WT_base | 5.34 | HC |
| SRR6498699 | leaf | "WT, Control" | 211.33 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 666.55 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 107.35 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 50.16 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 104.32 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 25.58 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 13.73 | HC |
| SRR6365694 | panicle | Wild type | 9.05 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 21.94 | HC |
| SRR6810101 | seedling | seedling | 90.38 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 17.96 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 41.43 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 38.80 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 5.07 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 12.26 | HC |
| SRR1849784 | root | Control 120min | 16.21 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 36.21 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 31.07 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 57.15 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 25.62 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 16.81 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 16.66 | HC |
| SRR3110556 | shoot | shoot control | 126.21 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 11.77 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 50.73 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 26.77 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 6.01 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 101.62 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 28.62 | HC |
| SRR1061618 | flag_leaf | Normal | 100.73 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 78.45 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 106.53 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 94.88 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 100.45 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 106.95 | HC |
| SRR2544786 | embryo | dry seed | 65.27 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 120.07 | HC |
| SRR6810102 | seedling | seedling | 87.50 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 59.85 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 45.79 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 28.02 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 119.98 | HC |
| SRR1740024 | seedling | N22-Control | 29.49 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 109.03 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 91.15 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 35.98 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 39.24 | HC |
| SRR1654490 | leaf | wild type | 59.21 | HC |
| SRR3110557 | shoot | shoot treated | 69.11 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 9.43 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 24.44 | HC |