RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 105

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR156j-5p	miRbase		Chr6	26554836	26554855	+	Y/Y
osa-miR156j-3p	miRbase		Chr6	26554902	26554923	+	N/N
Osa-miR160b	miRbase/PmiREN	/	Chr6	28081049	28081069	+	Y/N
osa-miR160b-3p	miRbase		Chr6	28081112	28081132	+	Y/N
osa-miR166b-5p	miRbase		Chr6	30327248	30327268	-	Y/Y
Osa-miR166b	miRbase/PmiREN	/	Chr6	30327102	30327122	-	Y/N
osa-miR171a	miRbase		Chr6	25891198	25891218	+	Y/N
Osa-miR396b	miRbase/PmiREN	/	Chr6	3669659	3669679	+	Y/Y
osa-miR396b-3p	miRbase		Chr6	3669736	3669755	+	Y/Y
osa-miR397a	miRbase		Chr6	28489795	28489815	+	Y/Y
osa-miR399d	miRbase		Chr6	1562044	1562064	+	Y/N
Osa-miR399f	miRbase/PmiREN	/	Chr6	20888641	20888661	-	Y/N
Osa-miR167i	miRbase/PmiREN	/	Chr6	27674759	27674779	+	Y/N
osa-miR167i-3p	miRbase		Chr6	27674921	27674941	+	Y/N
Osa-miR169b	miRbase/PmiREN	/	Chr6	27296005	27296025	-	Y/N
osa-miR438	miRbase		Chr6	20745988	20746008	+	N/N
osa-miR439h	miRbase		Chr6	1553126	1553146	-	Y/N
osa-miR812c	miRbase		Chr6	26260440	26260461	+	N/N
Osa-miR1861h	miRbase/PmiREN	/	Chr6	27238262	27238283	-	Y/Y
Osa-miR1861i	miRbase/PmiREN	/	Chr6	14949513	14949534	+	Y/Y
Osa-miR1870	miRbase/PmiREN	/	Chr6	21164798	21164821	+	N/Y
osa-miR1870-3p	miRbase		Chr6	21164894	21164917	+	Y/Y
Osa-miR1871	miRbase/PmiREN	/	Chr6	13330544	13330569	+	Y/N
osa-miR1872	miRbase		Chr6	4923876	4923899	-	Y/N
Osa-miR1320	miRbase/PmiREN	/	Chr6	5073570	5073590	-	Y/Y
osa-miR1320-3p	miRbase		Chr6	5073521	5073541	-	Y/Y
osa-miR2876-5p	miRbase		Chr6	17009125	17009145	-	N/N
osa-miR2876-3p	miRbase		Chr6	17008985	17009005	-	Y/N
Osa-miR396g	miRbase/PmiREN	/	Chr6	5300640	5300660	-	Y/Y
osa-miR2918	miRbase		Chr6	31091929	31091949	-	N/N
osa-miR2926	miRbase		Chr6	11402646	11402665	+	N/N
osa-miR2930	miRbase		Chr6	8376863	8376884	+	N/N
osa-miR2931	miRbase		Chr6	1893817	1893836	+	N/N
osa-miR5072	miRbase		Chr6	17458738	17458759	-	N/N
osa-miR5079a	miRbase		Chr6	28181418	28181439	+	N/N
Osa-miR5148b	miRbase/PmiREN	/	Chr6	27436699	27436724	+	Y/N
osa-miR5154	miRbase		Chr6	5263517	5263540	+	Y/N
osa-miR5339	miRbase		Chr6	29362783	29362803	-	N/N
Osa-miR5492	miRbase/PmiREN	/	Chr6	16973826	16973846	+	N/N
Osa-miR5508	miRbase/PmiREN	/	Chr6	638325	638345	-	Y/N
Osa-miR5517	miRbase/PmiREN	/	Chr6	24618693	24618715	-	N/N
Osa-miR5789	miRbase/PmiREN	/	Chr6	1801939	1801961	-	N/N
osa-miR5799	miRbase		Chr6	10732173	10732196	+	N/N
osa-miR812t	miRbase		Chr6	17370237	17370260	-	Y/N
osa-miR5806	miRbase		Chr6	24708676	24708696	+	Y/Y
Osa-miR5814	miRbase/PmiREN	/	Chr6	26661423	26661446	-	Y/N
Osa-miR5828	miRbase/PmiREN	/	Chr6	16015701	16015721	+	N/N
osa-miR5829	miRbase		Chr6	20149377	20149400	+	N/N
Osa-miR5834	miRbase/PmiREN	/	Chr6	4758671	4758691	-	N/N
Osa-miR5835	miRbase/PmiREN	/	Chr6	19306937	19306962	-	N/N
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR6250	miRbase		Chr6	28264709	28264730	+	N/N
osa-miR11340-5p	miRbase		Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase		Chr6	7715459	7715482	+	Y/N
Osa-miR397a	PmiREN		Chr6	28489798	28489818	+	Y/Y
Osa-miRN2232b	PmiREN		Chr6	8837476	8837496	+	Y/N
Osa-miR11340	PmiREN		Chr6	7715339	7715361	+	N/N
Osa-miR2876	PmiREN		Chr6	17008984	17009005	-	Y/N
Osa-miR5801h	PmiREN		Chr6	28888188	28888208	+	N/N
Osa-miR5801r	PmiREN		Chr6	26032953	26032972	+	N/N
Osa-miRN221f	PmiREN		Chr6	1095084	1095103	-	Y/N
Osa-miR11339ag	PmiREN		Chr6	23690441	23690461	+	N/N
Osa-miRN2298a	PmiREN		Chr6	15278119	15278139	-	Y/N
Osa-miRN2303b	PmiREN		Chr6	14075614	14075634	+	N/Y
Osa-miRN2329	PmiREN		Chr6	9654155	9654175	+	N/Y
Osa-miR156j	PmiREN		Chr6	26554835	26554855	+	Y/Y
Osa-miR156h	PmiREN		Chr6	27388145	27388164	+	N/N
Osa-miRN2303a	PmiREN		Chr6	13311859	13311879	+	N/Y
Osa-miRN2164e	PmiREN		Chr6	7075522	7075542	-	Y/N
Osa-miR812k	PmiREN		Chr6	19697439	19697458	-	Y/N
Osa-miR399d	PmiREN		Chr6	1561791	1561812	+	Y/N
Osa-miR399l	PmiREN		Chr6	20890950	20890970	+	Y/Y
Osa-miRN2347	PmiREN		Chr6	4789408	4789428	+	N/N
Osa-miR5821b	PmiREN		Chr6	21881275	21881295	+	N/N
Osa-miRN2364	PmiREN		Chr6	28324494	28324514	+	N/Y
Osa-miRN2311	PmiREN		Chr6	992257	992278	+	Y/N
Osa-miRN2312	PmiREN		Chr6	24608747	24608767	-	Y/Y
Osa-miR5819c	PmiREN		Chr6	8845536	8845556	+	N/N
Osa-miRN221e	PmiREN		Chr6	23591716	23591735	+	Y/N
Osa-miRN2267d	PmiREN		Chr6	11137339	11137359	+	N/Y
Osa-miRN2304	PmiREN		Chr6	24723463	24723483	-	Y/Y
Osa-miRN2328	PmiREN		Chr6	9669276	9669296	-	Y/Y
Osa-miR5801o	PmiREN		Chr6	5898601	5898621	-	Y/N
Osa-miRN2377	PmiREN		Chr6	28293791	28293811	+	N/Y
Osa-miR11339d	PmiREN		Chr6	9408438	9408458	-	N/N
Osa-miR11339e	PmiREN		Chr6	6835136	6835156	+	N/N
Osa-miR11339b	PmiREN		Chr6	30763690	30763710	-	N/N
Osa-miR11339c	PmiREN		Chr6	21843016	21843036	-	N/N
Osa-miR11339r	PmiREN		Chr6	28992325	28992345	+	Y/N
Osa-miR11339z	PmiREN		Chr6	8084212	8084233	+	N/N
Osa-miR11339x	PmiREN		Chr6	14421356	14421377	-	N/N
Osa-miR11339y	PmiREN		Chr6	12344123	12344144	-	N/N
Osa-miR439d	PmiREN		Chr6	1553137	1553160	-	N/N
Osa-miRN2274	PmiREN		Chr6	9588773	9588793	+	N/Y
Osa-miR171a	PmiREN		Chr6	25891201	25891221	+	Y/N
Osa-miR812ad	PmiREN		Chr6	30201985	30202008	-	Y/Y
Osa-miR812al	PmiREN		Chr6	27596226	27596249	-	Y/N
Osa-miR812am	PmiREN		Chr6	21245498	21245521	-	Y/Y
Osa-miRN2260b	PmiREN		Chr6	27970697	27970717	-	N/Y
Osa-miR5537c	PmiREN		Chr6	3109261	3109282	-	N/N
Osa-miRN2363	PmiREN		Chr6	24709936	24709956	+	N/Y
Osa-miRN2285f	PmiREN		Chr6	23376294	23376313	-	Y/Y
Osa-miRN41	RiceNCexp		Chr6	673536	673555	-	N/N
Osa-miRN42	RiceNCexp		Chr6	17877817	17877837	-	N/N
Osa-miRN43	RiceNCexp		Chr6	26554835	26554856	+	Y/Y