Chr:
Chr6
Start:
3669736
End:
3669755
Strand:
+
Sequence:
GUUCAAUAAAGCUGUGGGAA
Length:
20
precursor sequence:
CUUUGUGGUCUUCCACAGCUUUCUUGAACUGCAUCUUUGAGAGAGAUUAGCAUCCCUAUGUGUGGAUUUUGCUUGCACGAGUGUGCAGUUCAAUAAAGCUGUGGGAAAUUACAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
57
NEP:
20.8%
LE_num:
LEP:
24.45%
ME_num:
MEP:
52.55%
HE_num:
HEP:
2.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
25.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -2.00264731472171 | 0.0279121619486877 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.98913309816509 | 0.0442734498631847 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -2.84400975764221 | 0.0275685881073302 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -4.24418486350732 | 0.012796884208033 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -3.496933734637 | 0.0260656415249802 |