Chr:
Chr6
Start:
5073570
End:
5073590
Strand:
-
Sequence:
UGGAACGGAGGAAUUUUAUAG
Length:
21
precursor sequence:
GAUCAAAGUUAGGCCUACUUUGGAACGGAGGAAUUUUAUAGGAUUUUUGCGGGAAUUUUAACAGAUUCCUGUAAAAUUCAUUCGUUCCAAUGUAGCCCUAUUAGCUUUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
62
NEP:
22.63%
LE_num:
LEP:
10.95%
ME_num:
MEP:
43.07%
HE_num:
HEP:
23.36%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.91
Avg Expression:
88.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.7455363654213 | 0.0111613261880009 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 2.86648936040169 | 1.02851485141776e-09 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 2.87951149427082 | 2.36507051477061e-07 |
| 4 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.5450673803366 | 0.00600753529761111 |