Chr:
Chr6
Start:
5073521
End:
5073541
Strand:
-
Sequence:
UGUAAAAUUCAUUCGUUCCAA
Length:
21
precursor sequence:
UUAGGCCUACUUUGGAACGGAGGAAUUUUAUAGGAUUUUUGCGGGAAUUUUAACAGAUUCCUGUAAAAUUCAUUCGUUCCAAUGUAGCCCUAUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
68
NEP:
24.82%
LE_num:
LEP:
16.42%
ME_num:
MEP:
48.18%
HE_num:
HEP:
10.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.97
Avg Expression:
99.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.63179895440071 | 0.03758409807401 |
| 2 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.62111635339066 | 0.00127924183701105 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 4.58399088711743 | 3.90578314331434e-41 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 4.21095066591057 | 7.79374739163298e-43 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.04547721713129 | 0.00613795977646421 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.90290987470435 | 3.66046218880104e-07 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.51523472798028 | 3.32506867547258e-05 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 2.50432871175309 | 0.0179999271182936 |