RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 139

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156e	miRbase/PmiREN	/	Chr4	25026402	25026421	-	Y/Y
osa-miR395b	miRbase		Chr4	31805344	31805364	-	Y/N
Osa-miR395d	miRbase/PmiREN	/	Chr4	31805065	31805085	-	Y/N
osa-miR395e	miRbase		Chr4	31804922	31804942	-	Y/N
osa-miR395g	miRbase		Chr4	31804643	31804663	-	Y/N
Osa-miR395s	miRbase/PmiREN	/	Chr4	32622998	32623018	+	Y/N
osa-miR395c	miRbase		Chr4	31805203	31805223	-	Y/N
osa-miR395a	miRbase		Chr4	31805504	31805524	-	Y/N
osa-miR395f	miRbase		Chr4	31804781	31804801	-	N/N
osa-miR399j	miRbase		Chr4	28873196	28873216	+	Y/N
Osa-miR162b	miRbase/PmiREN	/	Chr4	24406002	24406022	+	Y/N
Osa-miR169c	miRbase/PmiREN	/	Chr4	30712419	30712439	-	Y/N
Osa-miR169g	miRbase/PmiREN	/	Chr4	19420087	19420107	+	Y/N
osa-miR171c-5p	miRbase		Chr4	31713541	31713561	-	Y/N
Osa-miR171c	miRbase/PmiREN	/	Chr4	31713482	31713502	-	Y/N
osa-miR171h	miRbase		Chr4	28482509	28482529	+	Y/Y
osa-miR393b-5p	miRbase		Chr4	34931960	34931981	-	Y/Y
osa-miR393b-3p	miRbase		Chr4	34931885	34931905	-	Y/Y
osa-miR416	miRbase		Chr4	17456252	17456272	+	N/N
Osa-miR396e	miRbase/PmiREN	/	Chr4	34436832	34436852	+	Y/N
osa-miR396e-3p	miRbase		Chr4	34436971	34436994	+	Y/N
osa-miR530-5p	miRbase		Chr4	8303665	8303684	-	Y/Y
osa-miR530-3p	miRbase		Chr4	8303546	8303566	-	Y/Y
osa-miR395m	miRbase		Chr4	32622092	32622112	+	Y/N
Osa-miR395n	miRbase/PmiREN	/	Chr4	32622288	32622308	+	Y/N
osa-miR395o	miRbase		Chr4	32622429	32622449	+	N/N
Osa-miR395p	miRbase/PmiREN	/	Chr4	32622572	32622592	+	Y/N
osa-miR395q	miRbase		Chr4	32622715	32622735	+	Y/N
osa-miR818d	miRbase		Chr4	34969181	34969202	-	N/N
Osa-miR529b	miRbase/PmiREN	/	Chr4	15883042	15883062	+	Y/Y
osa-miR1423-5p	miRbase		Chr4	19715137	19715160	+	Y/N
osa-miR1423-3p	miRbase		Chr4	19715211	19715231	+	Y/N
osa-miR1848	miRbase		Chr4	18131817	18131837	+	N/N
osa-miR1849	miRbase		Chr4	22224878	22224898	+	Y/N
osa-miR1861d	miRbase		Chr4	6536354	6536375	+	Y/N
osa-miR1861e	miRbase		Chr4	6536571	6536592	+	Y/N
osa-miR1868	miRbase		Chr4	19715494	19715517	+	Y/Y
Osa-miR812f	miRbase/PmiREN	/	Chr4	13243647	13243672	+	Y/N
osa-miR1869	miRbase		Chr4	21644862	21644885	+	N/N
osa-miR2121b	miRbase		Chr4	16882396	16882419	+	N/N
Osa-miR2118a	miRbase/PmiREN	/	Chr4	21642950	21642971	-	N/Y
Osa-miR2118b	miRbase/PmiREN	/	Chr4	21645323	21645344	-	Y/Y
Osa-miR2118c	miRbase/PmiREN	/	Chr4	21647968	21647991	-	Y/Y
Osa-miR2118d	miRbase/PmiREN	/	Chr4	21647727	21647748	-	Y/Y
Osa-miR2118e	miRbase/PmiREN	/	Chr4	21647463	21647486	-	Y/N
Osa-miR2118f	miRbase/PmiREN	/	Chr4	21650553	21650574	-	Y/Y
Osa-miR2118g	miRbase/PmiREN	/	Chr4	21650339	21650360	-	Y/Y
Osa-miR2118h	miRbase/PmiREN	/	Chr4	21652679	21652700	-	Y/Y
osa-miR2118i	miRbase		Chr4	21652426	21652447	-	N/Y
Osa-miR2118j	miRbase/PmiREN	/	Chr4	21654635	21654656	-	Y/Y
Osa-miR2118k	miRbase/PmiREN	/	Chr4	21656982	21657003	-	Y/Y
osa-miR2118l	miRbase		Chr4	21656743	21656764	-	N/Y
Osa-miR2118m	miRbase/PmiREN	/	Chr4	21658892	21658913	-	Y/Y
Osa-miR2118n	miRbase/PmiREN	/	Chr4	21661532	21661555	-	Y/Y
Osa-miR2118o	miRbase/PmiREN	/	Chr4	21661299	21661320	-	N/N
osa-miR2871b-5p	miRbase		Chr4	8340811	8340834	+	Y/Y
osa-miR2871b-3p	miRbase		Chr4	8340904	8340924	+	Y/N
Osa-miR2877	miRbase/PmiREN	/	Chr4	28585254	28585279	-	Y/N
osa-miR395x	miRbase		Chr4	32623127	32623147	+	N/N
Osa-miR1862g	miRbase/PmiREN	/	Chr4	20340401	20340422	-	N/Y
Osa-miR5150	miRbase/PmiREN	/	Chr4	18470798	18470823	+	Y/N
osa-miR5150-3p	miRbase		Chr4	18470833	18470856	+	Y/N
Osa-miR5337a	miRbase/PmiREN	/	Chr4	5621974	5621994	+	N/N
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
osa-miR5498	miRbase		Chr4	11830808	11830828	-	N/N
Osa-miR5499	miRbase/PmiREN	/	Chr4	17241810	17241832	+	N/N
osa-miR5500	miRbase		Chr4	27731077	27731098	+	N/N
osa-miR5501	miRbase		Chr4	28838215	28838235	+	N/N
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5512a	miRbase		Chr4	18387082	18387102	+	Y/N
osa-miR5515	miRbase		Chr4	17244231	17244251	+	Y/Y
osa-miR5522	miRbase		Chr4	21650334	21650354	+	N/N
osa-miR5523	miRbase		Chr4	18205684	18205705	-	Y/N
osa-miR5532	miRbase		Chr4	23647976	23647997	+	N/N
osa-miR5533	miRbase		Chr4	2761849	2761869	-	N/N
Osa-miR5542	miRbase/PmiREN	/	Chr4	32797727	32797747	-	N/N
osa-miR5543	miRbase		Chr4	16417319	16417339	-	N/N
osa-miR5803	miRbase		Chr4	30231544	30231567	+	Y/N
Osa-miR5804	miRbase/PmiREN	/	Chr4	20810170	20810190	-	Y/N
osa-miR5809	miRbase		Chr4	23527612	23527631	-	N/N
Osa-miR5813	miRbase/PmiREN	/	Chr4	9953000	9953021	-	N/N
osa-miR5818	miRbase		Chr4	13157349	13157369	+	N/Y
Osa-miR5827	miRbase/PmiREN	/	Chr4	30082047	30082067	-	N/N
osa-miR5512b	miRbase		Chr4	18386989	18387009	-	Y/N
osa-miR6249b	miRbase		Chr4	30286469	30286489	+	Y/N
Osa-miR2871	PmiREN		Chr4	8340904	8340924	+	Y/N
Osa-miR11337l	PmiREN		Chr4	14006148	14006168	+	N/N
Osa-miR5801n	PmiREN		Chr4	21147864	21147884	+	Y/N
Osa-miR5801p	PmiREN		Chr4	6449699	6449720	+	Y/N
Osa-miR393b	PmiREN		Chr4	34931961	34931981	-	Y/Y
Osa-miRN2325	PmiREN		Chr4	18612501	18612521	+	N/N
Osa-miRN2324	PmiREN		Chr4	17663211	17663231	+	N/Y
Osa-miR444c	PmiREN		Chr4	23053533	23053555	-	Y/N
Osa-miR812q	PmiREN		Chr4	23192972	23192993	-	Y/N
Osa-miR812x	PmiREN		Chr4	12430353	12430374	+	Y/N
Osa-miR399j	PmiREN		Chr4	28873196	28873215	+	Y/N
Osa-miRN2345	PmiREN		Chr4	21226048	21226068	-	N/Y
Osa-miRN2359	PmiREN		Chr4	13137356	13137376	-	N/Y
Osa-miR1869	PmiREN		Chr4	21644960	21644982	+	N/N
Osa-miR395a	PmiREN		Chr4	31805504	31805523	-	Y/N
Osa-miR395b	PmiREN		Chr4	31805343	31805363	-	Y/N
Osa-miR395c	PmiREN		Chr4	31805203	31805224	-	Y/N
Osa-miR395e	PmiREN		Chr4	31804922	31804943	-	Y/N
Osa-miR395g	PmiREN		Chr4	31804642	31804662	-	Y/N
Osa-miR395m	PmiREN		Chr4	32622093	32622113	+	Y/N
Osa-miR395o	PmiREN		Chr4	32622429	32622450	+	N/N
Osa-miR5795c	PmiREN		Chr4	11400635	11400656	-	Y/N
Osa-miRN2256	PmiREN		Chr4	20988745	20988765	+	N/Y
Osa-miR5512	PmiREN		Chr4	18386989	18387009	-	Y/N
Osa-miRN45a	PmiREN		Chr4	23654557	23654576	+	Y/N
Osa-miRN2283e	PmiREN		Chr4	24388669	24388689	-	Y/N
Osa-miR395q	PmiREN		Chr4	32622716	32622736	+	Y/N
Osa-miRN2375	PmiREN		Chr4	17474475	17474495	-	N/N
Osa-miR11339h	PmiREN		Chr4	27611219	27611238	+	Y/N
Osa-miRN2271	PmiREN		Chr4	18477956	18477977	+	Y/N
Osa-miRN2275	PmiREN		Chr4	17660213	17660233	+	Y/Y
Osa-miR395r	PmiREN		Chr4	32622858	32622879	+	Y/N
Osa-miR171h	PmiREN		Chr4	28482510	28482530	+	Y/Y
Osa-miR1861d	PmiREN		Chr4	6536355	6536375	+	Y/N
Osa-miR1861a	PmiREN		Chr4	6536571	6536591	+	Y/N
Osa-miR11342b	PmiREN		Chr4	23201075	23201095	+	N/N
Osa-miRN2293	PmiREN		Chr4	18680363	18680382	-	N/Y
Osa-miR482	PmiREN		Chr4	21654404	21654425	-	Y/Y
Osa-miR5809b	PmiREN		Chr4	23527612	23527633	-	N/N
Osa-miRN2276c	PmiREN		Chr4	34592807	34592827	-	Y/N
Osa-miR530	PmiREN		Chr4	8303664	8303684	-	Y/Y
Osa-miRN2237a	PmiREN		Chr4	9137284	9137303	-	Y/N
Osa-miRN2361	PmiREN		Chr4	12965130	12965150	+	N/N
Osa-miRN2360	PmiREN		Chr4	17717355	17717375	+	N/N
Osa-miRN2285e	PmiREN		Chr4	598059	598078	+	Y/Y
Osa-miRN2228a	PmiREN		Chr4	4926830	4926850	-	N/Y
Osa-miRN2281a	PmiREN		Chr4	16545760	16545780	+	Y/N
Osa-miRN32	RiceNCexp		Chr4	19420175	19420194	+	Y/N
Osa-miRN33	RiceNCexp		Chr4	25026401	25026420	-	Y/Y
Osa-miRN34	RiceNCexp		Chr4	26976691	26976711	-	N/N
Osa-miRN35	RiceNCexp		Chr4	27823597	27823617	-	N/N
Osa-miRN36	RiceNCexp		Chr4	29042291	29042310	+	Y/N
Osa-miRN37	RiceNCexp		Chr4	33303616	33303635	+	Y/N
Osa-miRN38	RiceNCexp		Chr4	34236111	34236130	-	Y/N