Chr:
Chr4
Start:
21647968
End:
21647991
Strand:
-
Sequence:
UUCCCGAUGCCUCCUAUUCCUA
Length:
22
precursor sequence:
UGGGAAUAGGAACAUGGAGGAAAGCCUAAAGCUAAAUUUUCUGCUCCAGUAUUGGAGCUAGAGAUUUGCUCAGUUUUCCCGAUGCCUCCUAUUCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
98
NEP:
35.77%
LE_num:
LEP:
22.63%
ME_num:
MEP:
24.45%
HE_num:
HEP:
17.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.91
Avg Expression:
192.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.06914598191846 | 0.0457794916140995 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.98259125849092 | 0.000356768120674633 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.27978452551346 | 0.00823975035305887 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.81899122581136 | 0.0100378509775472 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.06314559090782 | 0.00246812928329525 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.73210616637392 | 0.000273422662546078 |