RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR1862g_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

20340401

End:

20340422

Strand:

-

Sequence:

AUGAGGUUGGUUUAUUUUGG

Length:

20

precursor sequence:

CCAAAAUAAACAAACAUCGUGAUAGGAUGUGACACAUCAUAGUAACGAGUCUGAACACGUAGAAUAUCCAGAUUCGUUGUAUUAGGAUGUGUCACAAUUUAGUAUGAGGUUGGUUUAUUUUGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

206

NEP:

75.18%

LE_num:

28

LEP:

10.22%

ME_num:

23

MEP:

8.39%

HE_num:

17

HEP:

6.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.98

Avg Expression:

77.73

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR1862g_Both is not a differential expression ncRNA.