Chr:
Chr4
Start:
21147864
End:
21147884
Strand:
+
Sequence:
AUCCAACGAUCGGAAAUGAUU
Length:
21
precursor sequence:
CUGUACCUCACAAUACCAAAUCAUUUCGGAUCUUUAGAUUUAGCUGGGUAGGAUGGACAUUGUUAGAUCCAACGAUCGGAAAUGAUUUGGUACCGUGAGGUAUGGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
17
NEP:
6.2%
LE_num:
LEP:
14.23%
ME_num:
MEP:
74.09%
HE_num:
HEP:
5.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.76
Avg Expression:
7.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -1.69301494209811 | 0.000117468795586261 |
2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 1.49507598299633 | 0.0145431261241992 |