Chr:
Chr4
Start:
18205684
End:
18205705
Strand:
-
Sequence:
UGAGGAGGAACAUAUUUACUAG
Length:
22
precursor sequence:
UACUAGAAAACAAGUAAGUGUAAUUCCCCCUAAACAUUAAAAUAUGUUGACAUGAGGAGGAACAUAUUUACUAGUUAUAUUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
96
NEP:
35.04%
LE_num:
LEP:
39.05%
ME_num:
MEP:
25.18%
HE_num:
HEP:
0.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.92
Avg Expression:
2.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -7.67524472123774 | 1.02436502779086e-26 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -9.05404879021375 | 1.75603459178005e-16 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 4.49261467526748 | 0.00428403515043219 |