RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 110

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR169n	miRbase/PmiREN	/	Chr11	6085398	6085418	-	Y/Y
Osa-miR169o	miRbase/PmiREN	/	Chr11	6081670	6081690	-	Y/Y
osa-miR414	miRbase		Chr11	15504904	15504924	+	N/N
Osa-miR440	miRbase/PmiREN	/	Chr11	9164827	9164850	-	Y/N
Osa-miR535	miRbase/PmiREN	/	Chr11	16290598	16290618	-	Y/N
osa-miR535-3p	miRbase		Chr11	16290533	16290553	-	Y/N
osa-miR810b.1	miRbase		Chr11	959633	959653	-	Y/N
osa-miR810b.2	miRbase		Chr11	959609	959629	-	Y/Y
osa-miR1855	miRbase		Chr11	21709050	21709070	+	N/N
Osa-miR1856	miRbase/PmiREN	/	Chr11	10376266	10376286	-	Y/Y
osa-miR1857-5p	miRbase		Chr11	2733912	2733932	+	N/N
Osa-miR1857	miRbase/PmiREN	/	Chr11	2734001	2734021	+	N/Y
osa-miR1846b-5p	miRbase		Chr11	27715881	27715901	-	Y/N
Osa-miR1846b	miRbase/PmiREN	/	Chr11	27715852	27715872	-	Y/Y
Osa-miR1862e	miRbase/PmiREN	/	Chr11	2523291	2523314	+	Y/N
osa-miR1880	miRbase		Chr11	13959900	13959923	+	Y/N
Osa-miR1882f	miRbase/PmiREN	/	Chr11	11073503	11073526	+	N/N
Osa-miR1882g	miRbase/PmiREN	/	Chr11	20828629	20828652	+	N/N
osa-miR1883a	miRbase		Chr11	13523541	13523564	+	Y/N
osa-miR1883b	miRbase		Chr11	9368076	9368099	-	Y/N
osa-miR1319a	miRbase		Chr11	702144	702167	-	Y/N
osa-miR2100-5p	miRbase		Chr11	16195125	16195146	-	N/N
osa-miR2100-3p	miRbase		Chr11	16195009	16195030	-	N/N
osa-miR2104	miRbase		Chr11	13372018	13372039	-	N/N
Osa-miR2118p	miRbase/PmiREN	/	Chr11	7807471	7807492	-	Y/N
osa-miR2118q	miRbase		Chr11	7810747	7810768	-	Y/Y
osa-miR2118r	miRbase		Chr11	7810261	7810282	-	Y/N
osa-miR2867-5p	miRbase		Chr11	16277662	16277683	+	N/N
Osa-miR2867	miRbase/PmiREN	/	Chr11	16277721	16277740	+	N/Y
osa-miR2868	miRbase		Chr11	17938280	17938299	+	N/N
osa-miR2872	miRbase		Chr11	2525324	2525344	+	N/N
Osa-miR2873a	miRbase/PmiREN	/	Chr11	28933585	28933608	-	Y/N
osa-miR2907b	miRbase		Chr11	7278060	7278081	+	N/N
osa-miR2907c	miRbase		Chr11	11906618	11906639	+	N/N
osa-miR2921	miRbase		Chr11	22213557	22213580	+	N/N
osa-miR2923	miRbase		Chr11	21507100	21507121	+	N/N
osa-miR3979-5p	miRbase		Chr11	19480162	19480181	+	Y/Y
osa-miR3979-3p	miRbase		Chr11	19480234	19480253	+	Y/Y
osa-miR3982-5p	miRbase		Chr11	1384931	1384951	-	N/N
osa-miR3982-3p	miRbase		Chr11	1384745	1384765	-	Y/Y
osa-miR5075	miRbase		Chr11	7878346	7878366	-	N/N
osa-miR5082	miRbase		Chr11	1286653	1286676	+	Y/N
Osa-miR5148c	miRbase/PmiREN	/	Chr11	2813208	2813233	-	Y/N
Osa-miR5159	miRbase/PmiREN	/	Chr11	11920762	11920785	+	Y/N
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
osa-miR5509	miRbase		Chr11	24258785	24258805	-	Y/Y
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5528	miRbase		Chr11	9586997	9587017	-	N/N
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5534a	miRbase		Chr11	6404363	6404383	-	N/N
osa-miR5534b	miRbase		Chr11	6404490	6404510	-	N/N
osa-miR5790	miRbase		Chr11	7740111	7740134	-	N/N
osa-miR5793	miRbase		Chr11	24289002	24289022	+	Y/Y
osa-miR812r	miRbase		Chr11	18809925	18809948	+	Y/N
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
osa-miR812u	miRbase		Chr11	8663591	8663614	-	Y/Y
osa-miR5822	miRbase		Chr11	26335946	26335966	+	N/N
Osa-miR5823	miRbase/PmiREN	/	Chr11	21506687	21506712	-	N/N
osa-miR5826	miRbase		Chr11	12859207	12859230	+	N/N
osa-miR5837.2	miRbase		Chr11	24702182	24702202	-	N/N
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
osa-miR531c	miRbase		Chr11	26930692	26930715	+	Y/N
osa-miR11342-5p	miRbase		Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase		Chr11	23289311	23289332	-	N/N
Osa-miR3979	PmiREN		Chr11	19480162	19480182	+	Y/Y
Osa-miR1846g	PmiREN		Chr11	21603039	21603059	-	Y/Y
Osa-miR2118l	PmiREN		Chr11	7810747	7810768	-	Y/Y
Osa-miR2118i	PmiREN		Chr11	7810261	7810282	-	Y/N
Osa-miR3982	PmiREN		Chr11	1384746	1384766	-	Y/Y
Osa-miRN2283b	PmiREN		Chr11	24938808	24938828	+	Y/N
Osa-miRN2316	PmiREN		Chr11	20564657	20564677	+	N/N
Osa-miRN2283a	PmiREN		Chr11	4416847	4416867	+	Y/N
Osa-miRN2255	PmiREN		Chr11	27317151	27317171	+	N/Y
Osa-miRN2257	PmiREN		Chr11	1020771	1020791	-	Y/N
Osa-miRN2258	PmiREN		Chr11	19306983	19307003	+	N/N
Osa-miR812c	PmiREN		Chr11	3604005	3604024	+	Y/N
Osa-miR812o	PmiREN		Chr11	3914105	3914127	-	Y/N
Osa-miR812u	PmiREN		Chr11	18534922	18534942	+	Y/N
Osa-miR812w	PmiREN		Chr11	26272551	26272572	-	Y/N
Osa-miR531c	PmiREN		Chr11	26930692	26930713	+	Y/N
Osa-miRN2350	PmiREN		Chr11	24771256	24771276	+	N/N
Osa-miRN2265	PmiREN		Chr11	11438936	11438957	+	N/N
Osa-miR9664	PmiREN		Chr11	7342344	7342364	-	Y/N
Osa-miRN2315	PmiREN		Chr11	16391272	16391292	+	N/Y
Osa-miRN2283c	PmiREN		Chr11	3821417	3821437	+	Y/N
Osa-miRN2282	PmiREN		Chr11	959655	959675	+	Y/N
Osa-miRN2286	PmiREN		Chr11	16646688	16646708	-	N/Y
Osa-miRN2287	PmiREN		Chr11	9449683	9449703	+	N/Y
Osa-miR5801f	PmiREN		Chr11	20541522	20541542	+	N/N
Osa-miRN2372	PmiREN		Chr11	24569670	24569690	-	N/Y
Osa-miR814	PmiREN		Chr11	6537593	6537612	+	Y/N
Osa-miR11339u	PmiREN		Chr11	25244496	25244516	+	Y/N
Osa-miR1883	PmiREN		Chr11	13523542	13523565	+	Y/N
Osa-miRN2371	PmiREN		Chr11	25080569	25080589	-	Y/Y
Osa-miR11342a	PmiREN		Chr11	23289399	23289420	-	Y/N
Osa-miR5837	PmiREN		Chr11	24702182	24702202	-	N/N
Osa-miR5537b	PmiREN		Chr11	19389088	19389109	+	N/N
Osa-miRN2276a	PmiREN		Chr11	149510	149530	-	Y/N
Osa-miRN2285c	PmiREN		Chr11	21857897	21857916	+	Y/Y
Osa-miRN2292	PmiREN		Chr11	9840141	9840161	+	N/N
Osa-miRN2368	PmiREN		Chr11	23042124	23042144	-	N/N
Osa-miRN2285d	PmiREN		Chr11	6974869	6974888	-	Y/Y
Osa-miRN60	RiceNCexp		Chr11	2191306	2191325	+	Y/N
Osa-miRN61	RiceNCexp		Chr11	7807330	7807350	+	N/Y
Osa-miRN62	RiceNCexp		Chr11	7810505	7810525	+	N/N
Osa-miRN63	RiceNCexp		Chr11	8963236	8963256	+	N/N
Osa-miRN64	RiceNCexp		Chr11	11916678	11916698	+	N/N
Osa-miRN65	RiceNCexp		Chr11	19480163	19480184	+	Y/Y
Osa-miRN66	RiceNCexp		Chr11	19480234	19480253	+	N/Y