Chr:
Chr4
Start:
8303546
End:
8303566
Strand:
-
Sequence:
AGGUGCAGAGGCAGAUGCAAC
Length:
21
precursor sequence:
GUGAUAGAGCUGCAUUUGCACCUGCACCUACAGAGAGGAAGAUGAAGCAGCAAGCUAGCAAUACGUGCUUGAUCGCUAUACGCUAGCUUCUUGCACACAAUGUUGUUCCUGGUCUCUUCCUGAUCCCUAGGUGCAGAGGCAGAUGCAACUAUGUCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
125
NEP:
45.62%
LE_num:
LEP:
10.58%
ME_num:
MEP:
22.26%
HE_num:
HEP:
21.53%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.95
Avg Expression:
267.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -2.10818460988875 | 0.0070505373778749 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -3.21987927142934 | 0.00429824687295001 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.67590081036999 | 4.13551335993756e-22 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -2.22306313572148 | 1.04192585739602e-23 |
| 5 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -1.17216626625791 | 2.72100524175397e-05 |