Chr:
Chr4
Start:
21650553
End:
21650574
Strand:
-
Sequence:
UUCCUGAUGCCUCCCAUUCCUA
Length:
22
precursor sequence:
GAGAGGGUUCAAUAGCAGUGGGAAUGGGAACAUGGAGGAAAGCAUGAGCUCUAAAUUUCCUCCAAAGGAGAUCCUGCUUUGUGUUUUCCUGAUGCCUCCCAUUCCUAUUGUUCUUGGGUGCUCCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
58
NEP:
21.17%
LE_num:
LEP:
27.01%
ME_num:
MEP:
33.58%
HE_num:
HEP:
18.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.93
Avg Expression:
472.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.75321395365266 | 5.6567745188989e-12 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.93507133381644 | 4.72762138077509e-13 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -3.15894291499048 | 0.0101077662011712 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -4.56226329109961 | 0.00934013179884052 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -4.7355613027354 | 0.00685208779501615 |