RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 126

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR156f-5p	miRbase		Chr8	21478233	21478252	+	Y/Y
osa-miR156f-3p	miRbase		Chr8	21478393	21478414	+	Y/N
osa-miR156h-5p	miRbase		Chr8	21491235	21491254	+	Y/Y
osa-miR156h-3p	miRbase		Chr8	21491395	21491416	+	Y/N
Osa-miR160c	miRbase/PmiREN	/	Chr8	1707574	1707594	+	Y/N
osa-miR160c-3p	miRbase		Chr8	1707642	1707662	+	Y/Y
osa-miR395h	miRbase		Chr8	3299225	3299245	+	Y/N
Osa-miR395i	miRbase/PmiREN	/	Chr8	3299387	3299407	+	Y/N
osa-miR395j	miRbase		Chr8	3299560	3299580	+	Y/N
Osa-miR395k	miRbase/PmiREN	/	Chr8	3299720	3299740	+	Y/N
osa-miR395l	miRbase		Chr8	3300070	3300090	+	Y/N
Osa-miR160f	miRbase/PmiREN	/	Chr8	24396892	24396912	+	Y/N
osa-miR160f-3p	miRbase		Chr8	24396953	24396973	+	Y/N
Osa-miR169h	miRbase/PmiREN	/	Chr8	26807359	26807379	+	Y/Y
osa-miR169i-5p.2	miRbase		Chr8	26803136	26803157	+	Y/Y
Osa-miR169i	miRbase/PmiREN	/	Chr8	26803159	26803179	+	Y/Y
osa-miR169i-3p	miRbase		Chr8	26803250	26803271	+	Y/N
Osa-miR169l	miRbase/PmiREN	/	Chr8	26817498	26817518	+	Y/Y
Osa-miR169m	miRbase/PmiREN	/	Chr8	26813907	26813927	+	Y/Y
osa-miR169p	miRbase		Chr8	7641421	7641442	-	Y/N
osa-miR169q	miRbase		Chr8	26817565	26817585	-	Y/N
Osa-miR171b	miRbase/PmiREN	/	Chr8	5369222	5369242	+	Y/N
osa-miR166m	miRbase		Chr8	23045502	23045522	+	Y/Y
osa-miR417	miRbase		Chr8	14939896	14939916	+	N/N
osa-miR439g	miRbase		Chr8	3664291	3664311	+	Y/N
Osa-miR444a	miRbase/PmiREN	/	Chr8	20895018	20895040	+	Y/N
osa-miR531a	miRbase		Chr8	1220398	1220421	-	Y/N
osa-miR812e	miRbase		Chr8	16401286	16401307	+	N/N
osa-miR821c	miRbase		Chr8	19925361	19925384	-	N/N
Osa-miR1427	miRbase/PmiREN	/	Chr8	9192766	9192786	+	Y/N
osa-miR1429-5p	miRbase		Chr8	2037052	2037072	-	N/Y
osa-miR1429-3p	miRbase		Chr8	2036954	2036974	-	Y/N
Osa-miR444e	miRbase/PmiREN	/	Chr8	20884829	20884851	+	Y/N
osa-miR1437a	miRbase		Chr8	3956048	3956069	+	Y/N
osa-miR1853-5p	miRbase		Chr8	3689146	3689169	-	N/N
osa-miR1853-3p	miRbase		Chr8	3689101	3689122	-	N/N
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
osa-miR1854-3p	miRbase		Chr8	7858374	7858395	-	N/N
Osa-miR1861j	miRbase/PmiREN	/	Chr8	15132802	15132823	-	Y/Y
osa-miR1861k	miRbase		Chr8	15132584	15132605	-	Y/N
Osa-miR1862b	miRbase/PmiREN	/	Chr8	8341244	8341267	-	Y/N
osa-miR1874-5p	miRbase		Chr8	8702892	8702915	-	Y/Y
Osa-miR1874	miRbase/PmiREN	/	Chr8	8702823	8702846	-	Y/Y
Osa-miR1882b	miRbase/PmiREN	/	Chr8	9847268	9847293	+	N/N
Osa-miR1882d	miRbase/PmiREN	/	Chr8	18739434	18739457	-	N/N
Osa-miR812j	miRbase/PmiREN	/	Chr8	19806531	19806556	+	Y/N
osa-miR2120	miRbase		Chr8	22733821	22733844	+	N/N
osa-miR2275a	miRbase		Chr8	1205071	1205092	+	N/N
osa-miR2275b	miRbase		Chr8	1202555	1202576	+	N/N
osa-miR2874	miRbase		Chr8	15598096	15598119	+	Y/N
osa-miR2875	miRbase		Chr8	27092100	27092123	+	N/N
Osa-miR2878	miRbase/PmiREN	/	Chr8	26181392	26181417	+	Y/N
osa-miR2878-3p	miRbase		Chr8	26181435	26181458	+	Y/N
osa-miR395y	miRbase		Chr8	3299895	3299915	+	Y/N
Osa-miR812m	miRbase/PmiREN	/	Chr8	20574810	20574833	+	Y/Y
osa-miR812n-5p	miRbase		Chr8	14108258	14108281	-	Y/N
Osa-miR812n	miRbase/PmiREN	/	Chr8	14108083	14108106	-	Y/N
osa-miR5071	miRbase		Chr8	4114070	4114090	-	N/N
osa-miR5073	miRbase		Chr8	19020505	19020527	+	Y/N
osa-miR5155	miRbase		Chr8	9179597	9179620	-	N/N
osa-miR5156	miRbase		Chr8	16956068	16956091	-	N/N
osa-miR5157a-5p	miRbase		Chr8	21476224	21476247	-	N/N
osa-miR5157a-3p	miRbase		Chr8	21476175	21476198	-	N/N
osa-miR5157b-5p	miRbase		Chr8	21489226	21489249	-	N/N
osa-miR5157b-3p	miRbase		Chr8	21489177	21489200	-	N/N
osa-miR5158	miRbase		Chr8	23993600	23993623	+	Y/N
osa-miR2275d	miRbase		Chr8	3736826	3736847	-	Y/Y
Osa-miR812p	miRbase/PmiREN	/	Chr8	25426161	25426184	+	Y/N
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5807	miRbase		Chr8	3597816	3597839	-	N/N
osa-miR818f	miRbase		Chr8	18746593	18746613	-	N/N
osa-miR1437b-5p	miRbase		Chr8	3956058	3956078	-	N/N
osa-miR1437b-3p	miRbase		Chr8	3955932	3955955	-	Y/N
osa-miR5801c-5p	miRbase		Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase		Chr8	20930517	20930537	+	N/N
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miR5801j	PmiREN		Chr8	20607786	20607806	+	N/N
Osa-miR5801l	PmiREN		Chr8	26861955	26861975	-	Y/N
Osa-miRN2373c	PmiREN		Chr8	5571357	5571377	+	N/N
Osa-miR1429	PmiREN		Chr8	2036951	2036974	-	N/N
Osa-miR169p	PmiREN		Chr8	7641337	7641357	+	Y/N
Osa-miRN2276e	PmiREN		Chr8	13368415	13368435	-	Y/N
Osa-miR2275d	PmiREN		Chr8	3736892	3736912	-	Y/Y
Osa-miR2275e	PmiREN		Chr8	1204908	1204929	+	N/N
Osa-miR2275f	PmiREN		Chr8	4403927	4403947	-	N/N
Osa-miR2275g	PmiREN		Chr8	4404028	4404049	-	N/Y
Osa-miR2275a	PmiREN		Chr8	1205021	1205041	+	N/N
Osa-miR2275b	PmiREN		Chr8	1202505	1202525	+	N/N
Osa-miR2275h	PmiREN		Chr8	4384923	4384944	-	N/Y
Osa-miRN2276f	PmiREN		Chr8	3982102	3982122	-	Y/N
Osa-miR156f	PmiREN		Chr8	21478232	21478252	+	Y/Y
Osa-miR812r	PmiREN		Chr8	21686719	21686740	-	Y/N
Osa-miR812y	PmiREN		Chr8	27821214	27821237	+	Y/N
Osa-miR531a	PmiREN		Chr8	1220400	1220421	-	Y/N
Osa-miR2275j	PmiREN		Chr8	3736692	3736712	-	Y/Y
Osa-miR156m	PmiREN		Chr8	21491234	21491254	+	Y/Y
Osa-miR395f	PmiREN		Chr8	3299895	3299915	+	Y/N
Osa-miR395h	PmiREN		Chr8	3299226	3299246	+	Y/N
Osa-miR395j	PmiREN		Chr8	3299560	3299581	+	Y/N
Osa-miR395l	PmiREN		Chr8	3300071	3300091	+	Y/N
Osa-miRN2310	PmiREN		Chr8	17848878	17848899	-	Y/N
Osa-miR11337a	PmiREN		Chr8	1665252	1665273	-	Y/N
Osa-miRN2307	PmiREN		Chr8	17084861	17084881	+	N/Y
Osa-miRN2306	PmiREN		Chr8	1202343	1202363	+	N/Y
Osa-miRN2289	PmiREN		Chr8	18629272	18629292	-	Y/Y
Osa-miR11339a	PmiREN		Chr8	10041686	10041706	+	Y/N
Osa-miR11339m	PmiREN		Chr8	26541373	26541393	+	N/N
Osa-miR439g	PmiREN		Chr8	3664278	3664301	+	N/N
Osa-miR11339ab	PmiREN		Chr8	23267654	23267675	+	N/N
Osa-miR1861e	PmiREN		Chr8	15132585	15132605	-	Y/N
Osa-miR812ab	PmiREN		Chr8	18137891	18137912	+	Y/N
Osa-miR166m	PmiREN		Chr8	23045502	23045521	+	Y/Y
Osa-miR812ak	PmiREN		Chr8	2687961	2687984	+	Y/N
Osa-miR821	PmiREN		Chr8	19925167	19925189	-	N/N
Osa-miRN2237c	PmiREN		Chr8	22325694	22325715	+	Y/N
Osa-miRN2290	PmiREN		Chr8	10061176	10061196	-	N/Y
Osa-miRN2229b	PmiREN		Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN		Chr8	705385	705405	+	Y/Y
Osa-miRN2281b	PmiREN		Chr8	3513112	3513132	+	Y/N
Osa-miRN45	RiceNCexp		Chr8	1707574	1707594	+	Y/N
Osa-miRN46	RiceNCexp		Chr8	23072750	23072771	+	N/N
Osa-miRN47	RiceNCexp		Chr8	23072797	23072818	-	N/N
Osa-miRN48	RiceNCexp		Chr8	26807360	26807381	+	Y/Y
Osa-miRN49	RiceNCexp		Chr8	26814007	26814027	+	Y/N
Osa-miRN50	RiceNCexp		Chr8	26817569	26817589	+	Y/N