Chr:
Chr8
Start:
14108083
End:
14108106
Strand:
-
Sequence:
ACGGAAAAUCAUGGCUGCACUUAA
Length:
24
precursor sequence:
UACUCCCUCCGUCCCAUCUUAAGUGCAGCCAUGAGUUUCCGUGCCCAACUUUAUCGUUCGUCUUAUUUGAAAUUUUUUUAUGAUUAGUAUUUCUAUUGUUAUUAGAUGAUAAAACAUGAAUAGUACUUUAUGUGUGACUUAUGUUUUUAUUGUUUUUAAAAAAAAUUCAAAUAACACAGACGAUCAAAGUUGGGCACGGAAAAUCAUGGCUGCACUUAAAAUGGGACGGAGGGAGUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
14
NEP:
5.11%
LE_num:
LEP:
11.31%
ME_num:
MEP:
72.99%
HE_num:
HEP:
10.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.87
Avg Expression:
29.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 1.56909644523062 | 2.74181325012119e-05 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.21388054025808 | 1.7168332854037e-07 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.25695178983766 | 3.80238528774418e-06 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.24352219219676 | 6.20370655632945e-07 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -3.06814842487586 | 0.0214036090361219 |