Chr:
Chr8
Start:
3736826
End:
3736847
Strand:
-
Sequence:
CUUGUUUUUCUCCAAUAUCUCA
Length:
22
precursor sequence:
UUGUUCAGGCACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGUUGUUUGCAACAGUGUGGCAAACAAUGUUCAGCUUGUUUUUCUCCAAUAUCUCACCUUCAGGUUGAUUGCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
71
NEP:
25.91%
LE_num:
LEP:
30.66%
ME_num:
MEP:
29.2%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
162.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.4911569416207 | 0.000756938721921401 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -4.83575991360391 | 6.73205726005611e-07 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.09738835137876 | 2.01985293286819e-05 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.69118743365726 | 0.00607145629839639 |