Chr:
Chr8
Start:
7641421
End:
7641442
Strand:
-
Sequence:
UAGCCAAGGACAAACUUGCCGG
Length:
22
precursor sequence:
GAGCAAGGUGUAGCCAAGGACAAACUUGCCGGAUCAACAGAGAAGGACUGCCAGUCUCCGGCCAAUUAAUUAACCUCGCCGUCGGCCAUCGCCGGCCGGCAAGUCAUCCUUGGCUGCAUCCUGCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
50
NEP:
18.25%
LE_num:
LEP:
11.68%
ME_num:
MEP:
64.96%
HE_num:
HEP:
5.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.83
Avg Expression:
11.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | 2.09279802182826 | 0.0202279971688911 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.83816367072803 | 0.0048659750467504 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.88764587463178 | 0.000364976016883436 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -3.37707968964778 | 0.0381569796405711 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -5.13182467150624 | 0.0275685881073302 |
| 6 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -2.04174348055807 | 0.00350374528256273 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2.48679647694241 | 0.00185919951408818 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.39306705982608 | 0.00582193692940702 |
| 9 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.8337942456617 | 0.0329520330044816 |