Chr:
Chr8
Start:
705385
End:
705405
Strand:
+
Sequence:
CUGGCGCUGAACUUAGACACC
Length:
21
precursor sequence:
UUUGGUCAGCGCCAAAUCACCUGGCGCUGAACUUAGACACCUUAGCUACAUAUCAACUGGCGCUGAAUGCCGUGCCACCGCGGAUGGGAGACUAAGUCAGCGUGCCAACGCAUAUUCAGCGCCACGCUAUUUGGCGCUGAGGUGUCUAAGUUCGGCGCCAAGGGUUAUUUUUGAAAUAAGUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
35
NEP:
12.77%
LE_num:
LEP:
20.44%
ME_num:
MEP:
62.04%
HE_num:
HEP:
4.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.94
Avg Expression:
29.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -1.6297459591879 | 3.61663282331144e-08 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.34647405546387 | 4.64677532837982e-13 |
| 3 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.57941588850861 | 0.000386335688434985 |