RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 155

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156a	miRbase/PmiREN	/	Chr1	22524221	22524240	-	Y/Y
Osa-miR156b	miRbase/PmiREN	/	Chr1	4666383	4666402	+	Y/Y
osa-miR156b-3p	miRbase		Chr1	4666450	4666470	+	Y/Y
Osa-miR156c	miRbase/PmiREN	/	Chr1	4666003	4666022	+	Y/Y
osa-miR156c-3p	miRbase		Chr1	4666074	4666095	+	Y/Y
osa-miR169a	miRbase		Chr1	8729141	8729161	+	Y/Y
Osa-miR393a	miRbase/PmiREN	/	Chr1	2309233	2309253	-	Y/Y
Osa-miR399a	miRbase/PmiREN	/	Chr1	30478754	30478774	+	Y/Y
Osa-miR399e	miRbase/PmiREN	/	Chr1	30477622	30477642	-	Y/N
osa-miR159a.2	miRbase		Chr1	17682123	17682143	+	Y/N
osa-miR159a.1	miRbase		Chr1	17682164	17682184	+	Y/N
Osa-miR159b	miRbase/PmiREN	/	Chr1	1215187	1215207	+	Y/N
osa-miR159c	miRbase		Chr1	6556058	6556078	-	Y/Y
osa-miR159d	miRbase		Chr1	6563766	6563786	-	Y/Y
osa-miR159e	miRbase		Chr1	9760718	9760738	-	Y/Y
osa-miR159f	miRbase		Chr1	6693269	6693289	+	Y/N
osa-miR319a-5p	miRbase		Chr1	26823397	26823417	-	Y/N
osa-miR319a-3p	miRbase		Chr1	26823336	26823356	-	Y/N
osa-miR319a-3p.2-3p	miRbase		Chr1	26823292	26823311	-	Y/N
osa-miR319b	miRbase		Chr1	6677580	6677599	-	Y/N
osa-miR172b	miRbase		Chr1	42923746	42923766	-	Y/N
osa-miR408-5p	miRbase		Chr1	12301691	12301711	+	Y/Y
Osa-miR408	miRbase/PmiREN	/	Chr1	12301813	12301833	+	Y/N
osa-miR167j	miRbase		Chr1	32686182	32686202	-	Y/N
osa-miR439a	miRbase		Chr1	19880208	19880228	+	Y/N
osa-miR812a	miRbase		Chr1	33947325	33947346	+	N/N
osa-miR814a	miRbase		Chr1	22375048	22375069	+	Y/N
osa-miR818a	miRbase		Chr1	40415538	40415559	+	N/N
osa-miR820a	miRbase		Chr1	14130483	14130503	+	Y/N
osa-miR1426	miRbase		Chr1	7189323	7189343	-	N/N
osa-miR1428a-5p	miRbase		Chr1	13160785	13160805	+	Y/N
osa-miR1428a-3p	miRbase		Chr1	13160865	13160885	+	N/N
Osa-miR1431	miRbase/PmiREN	/	Chr1	4766355	4766375	-	Y/Y
osa-miR1435	miRbase		Chr1	29289440	29289459	-	N/N
osa-miR1436	miRbase		Chr1	20316606	20316626	-	Y/N
osa-miR531b	miRbase		Chr1	833970	833989	-	Y/N
Osa-miR1846d	miRbase/PmiREN	/	Chr1	39637075	39637096	+	Y/N
osa-miR1846d-3p	miRbase		Chr1	39637151	39637170	+	Y/Y
osa-miR1847.1	miRbase		Chr1	20332894	20332914	+	Y/N
osa-miR1847.2	miRbase		Chr1	20332937	20332960	+	N/N
osa-miR1428b	miRbase		Chr1	25390434	25390454	+	N/N
Osa-miR1859	miRbase/PmiREN	/	Chr1	673288	673309	-	Y/Y
osa-miR1860-5p	miRbase		Chr1	934510	934530	-	N/N
osa-miR1860-3p	miRbase		Chr1	934456	934477	-	N/N
osa-miR1861a	miRbase		Chr1	15049794	15049815	+	Y/N
osa-miR1862a	miRbase		Chr1	26192362	26192385	+	Y/N
osa-miR2090	miRbase		Chr1	38764364	38764385	-	Y/N
osa-miR2096-5p	miRbase		Chr1	6443398	6443418	+	N/N
osa-miR2096-3p	miRbase		Chr1	6443596	6443616	+	N/N
osa-miR2097-5p	miRbase		Chr1	9055610	9055631	+	N/N
osa-miR2097-3p	miRbase		Chr1	9055748	9055769	+	N/N
osa-miR2099-5p	miRbase		Chr1	42570862	42570883	+	N/N
osa-miR2099-3p	miRbase		Chr1	42570884	42570903	+	N/N
osa-miR2121a	miRbase		Chr1	16373523	16373546	+	N/N
osa-miR2870	miRbase		Chr1	27181881	27181901	-	N/N
osa-miR2924	miRbase		Chr1	11894404	11894424	+	N/N
osa-miR2925	miRbase		Chr1	25801074	25801092	+	N/N
osa-miR2927	miRbase		Chr1	37098129	37098151	+	N/N
osa-miR5076	miRbase		Chr1	43208632	43208653	-	Y/N
osa-miR5083	miRbase		Chr1	41010583	41010602	-	Y/N
osa-miR5143a	miRbase		Chr1	8417119	8417142	-	Y/N
osa-miR5144-5p	miRbase		Chr1	25326778	25326798	-	Y/N
osa-miR5144-3p	miRbase		Chr1	25326399	25326419	-	Y/Y
osa-miR5145	miRbase		Chr1	40622693	40622716	-	Y/N
osa-miR5146	miRbase		Chr1	22418344	22418367	+	N/N
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
osa-miR5540	miRbase		Chr1	35552738	35552758	-	N/N
Osa-miR5802	miRbase/PmiREN	/	Chr1	13088732	13088757	+	Y/N
Osa-miR5812	miRbase/PmiREN	/	Chr1	11846176	11846201	-	Y/N
osa-miR5815	miRbase		Chr1	25017383	25017406	-	Y/N
osa-miR5143b	miRbase		Chr1	8415818	8415841	-	Y/N
osa-miR5817	miRbase		Chr1	5990135	5990158	+	N/N
osa-miR5819	miRbase		Chr1	29695852	29695872	+	N/N
osa-miR5824	miRbase		Chr1	1761540	1761563	-	Y/N
osa-miR5830	miRbase		Chr1	4352598	4352621	-	Y/N
osa-miR7692-5p	miRbase		Chr1	26250210	26250233	+	N/N
osa-miR7692-3p	miRbase		Chr1	26250474	26250497	+	Y/N
osa-miR7695-5p	miRbase		Chr1	11667043	11667066	-	Y/N
osa-miR7695-3p	miRbase		Chr1	11666852	11666872	-	Y/Y
osa-miR11336-5p	miRbase		Chr1	35090297	35090320	+	Y/N
osa-miR11336-3p	miRbase		Chr1	35090379	35090403	+	N/N
osa-miR11339-5p	miRbase		Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase		Chr1	10371868	10371888	+	N/N
osa-miR2120b-5p	miRbase		Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase		Chr1	1830288	1830307	+	N/N
Osa-miRN2232e	PmiREN		Chr1	26307378	26307398	+	Y/N
Osa-miRN2203b	PmiREN		Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN		Chr1	25180654	25180674	+	Y/N
Osa-miRN2355	PmiREN		Chr1	20077203	20077223	+	N/N
Osa-miRN2320	PmiREN		Chr1	19145141	19145161	-	N/Y
Osa-miR5801e	PmiREN		Chr1	18014203	18014222	-	Y/N
Osa-miRN2195a	PmiREN		Chr1	7494658	7494678	+	N/N
Osa-miR2090	PmiREN		Chr1	38764362	38764387	-	Y/N
Osa-miR2905	PmiREN		Chr1	24415931	24415952	+	Y/N
Osa-miR172b	PmiREN		Chr1	42923746	42923765	-	Y/N
Osa-miRN2219	PmiREN		Chr1	8729125	8729145	+	Y/N
Osa-miR11339ad	PmiREN		Chr1	42099895	42099915	+	N/N
Osa-miRN2260a	PmiREN		Chr1	38771457	38771477	-	Y/N
Osa-miR5143	PmiREN		Chr1	8417119	8417142	-	Y/N
Osa-miR531b	PmiREN		Chr1	833967	833989	-	Y/N
Osa-miRN2340	PmiREN		Chr1	13885903	13885923	-	N/Y
Osa-miR159d	PmiREN		Chr1	6563767	6563786	-	Y/Y
Osa-miR159e	PmiREN		Chr1	9760719	9760738	-	Y/Y
Osa-miR159c	PmiREN		Chr1	6556059	6556078	-	Y/Y
Osa-miR159a	PmiREN		Chr1	6693269	6693288	+	Y/N
Osa-miRN2269	PmiREN		Chr1	4397489	4397508	+	N/N
Osa-miR5799	PmiREN		Chr1	3400995	3401018	-	N/N
Osa-miR167j	PmiREN		Chr1	32686181	32686202	-	Y/N
Osa-miR11337h	PmiREN		Chr1	29451486	29451506	-	Y/N
Osa-miR1428a	PmiREN		Chr1	13160785	13160806	+	Y/N
Osa-miR5819a	PmiREN		Chr1	29695852	29695872	+	N/N
Osa-miR11337c	PmiREN		Chr1	42763684	42763704	+	Y/N
Osa-miRN2373a	PmiREN		Chr1	32966906	32966926	-	N/N
Osa-miRN2267c	PmiREN		Chr1	28420010	28420030	-	N/Y
Osa-miR820a	PmiREN		Chr1	14130483	14130504	+	Y/N
Osa-miRN2301	PmiREN		Chr1	11883749	11883769	-	N/Y
Osa-miRN2300	PmiREN		Chr1	34289922	34289942	+	Y/Y
Osa-miR11336	PmiREN		Chr1	35090303	35090323	-	Y/N
Osa-miRN2284	PmiREN		Chr1	22934987	22935007	-	Y/N
Osa-miR319a	PmiREN		Chr1	26823291	26823311	-	Y/N
Osa-miR319b	PmiREN		Chr1	6677579	6677599	-	Y/N
Osa-miR5801c	PmiREN		Chr1	5168626	5168645	-	Y/N
Osa-miR5801g	PmiREN		Chr1	17742512	17742532	-	Y/N
Osa-miR11339l	PmiREN		Chr1	29242336	29242356	+	N/N
Osa-miR11339p	PmiREN		Chr1	11324633	11324656	-	N/N
Osa-miR439c	PmiREN		Chr1	18021796	18021817	+	Y/N
Osa-miR11339ah	PmiREN		Chr1	10371867	10371892	+	N/N
Osa-miR812an	PmiREN		Chr1	15765333	15765354	+	Y/N
Osa-miRN2164b	PmiREN		Chr1	34779342	34779362	+	Y/N
Osa-miRN2164c	PmiREN		Chr1	9049212	9049232	+	Y/N
Osa-miR5819b	PmiREN		Chr1	38527800	38527820	+	N/N
Osa-miR11337g	PmiREN		Chr1	25287023	25287043	+	Y/N
Osa-miRN2280	PmiREN		Chr1	33588810	33588830	+	Y/N
Osa-miR5788b	PmiREN		Chr1	38985769	38985789	-	N/N
Osa-miR812ag	PmiREN		Chr1	23374135	23374156	-	Y/N
Osa-miR812aq	PmiREN		Chr1	27167165	27167186	+	Y/N
Osa-miRN01	RiceNCexp		Chr1	2068759	2068778	-	N/N
Osa-miRN02	RiceNCexp		Chr1	2309154	2309173	-	Y/N
Osa-miRN03	RiceNCexp		Chr1	2309230	2309250	-	Y/Y
Osa-miRN04	RiceNCexp		Chr1	4766346	4766366	-	Y/N
Osa-miRN05	RiceNCexp		Chr1	4766347	4766367	-	Y/N
Osa-miRN06	RiceNCexp		Chr1	4766354	4766373	-	N/N
Osa-miRN07	RiceNCexp		Chr1	4766362	4766382	-	N/N
Osa-miRN08	RiceNCexp		Chr1	4766513	4766533	-	N/N
Osa-miRN09	RiceNCexp		Chr1	11666844	11666864	-	Y/Y
Osa-miRN10	RiceNCexp		Chr1	11667021	11667041	-	N/N
Osa-miRN11	RiceNCexp		Chr1	11667043	11667064	-	N/N
Osa-miRN12	RiceNCexp		Chr1	11667044	11667064	-	N/N
Osa-miRN13	RiceNCexp		Chr1	12301814	12301833	+	Y/N
Osa-miRN14	RiceNCexp		Chr1	14130486	14130507	+	N/N
Osa-miRN15	RiceNCexp		Chr1	18049428	18049448	+	N/N
Osa-miRN16	RiceNCexp		Chr1	22524220	22524239	-	Y/N
Osa-miRN17	RiceNCexp		Chr1	39048236	39048255	+	N/N
Osa-miRN18	RiceNCexp		Chr1	41260752	41260771	-	Y/N