Chr:
Chr8
Start:
26807359
End:
26807379
Strand:
+
Sequence:
UAGCCAAGGAUGACUUGCCUG
Length:
21
precursor sequence:
AGACAAGGGUUUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUCCUUGUGUGUAAGGAUCAUUAAUUAUUAUUCAGAAAAUGAUCCUUUCAGCAGGUUUCAUGGGCAGUCUCCUUGGCUAGCCUGAGUGAUUCUUGUCACUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
13.14%
ME_num:
MEP:
35.04%
HE_num:
HEP:
45.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.96
Avg Expression:
354.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 3.04809200501012 | 0.00424038379473297 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -5.48702609743883 | 2.84536846823043e-33 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.54370026127351 | 2.80964531634823e-31 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 2.27094638826174 | 9.01125258555319e-05 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.78222900352697 | 1.34948101428434e-06 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 2.17861480944294 | 2.6738323775e-13 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.61294680847084 | 2.6734640540685e-26 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.07831064567354 | 3.32653046674133e-11 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 2.17509460201448 | 2.30844109603151e-42 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.18623851869261 | 1.03300793349405e-10 |