osa-miR156f-3p_miRbase


Function Link


Basic Info

Chr:

Chr8

Start:

21478393

End:

21478414

Strand:

+

Sequence:

GCUCACUUCUCUUUCUGUCAGC

Length:

22

precursor sequence:

AGUUGACAGAAGAGAGUGAGCACACAGCGGCCAGACUGCAUCGAUCUAUCAAUCUUCCCUUCGACAGGAUAGCUAGAUAGAAAGAAAGAGAGGCCGUCGGCGGCCAUGGAAGAGAGAGAGAGAGAGAGAUGAAAUGAUGAUGAUGAUACAGCUGCCGCUGCGUGCUCACUUCUCUUUCUGUCAGCU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

51

NEP:

18.61%

LE_num:

29

LEP:

10.58%

ME_num:

132

MEP:

48.18%

HE_num:

62

HEP:

22.63%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

lamina_joint

Tau :

0.85

Avg Expression:

151.66

Tip: osa-miR156f-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2)8.430870170886215.09238284013343e-07
2PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1)7.937428785260492.69008887988208e-06
3PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1)-1.49454309481520.0266400786037349
4PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1)7.468629782308247.86503769283341e-06
5PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2)8.213315995479877.84130113323499e-07
6glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate2.378538145729064.13427991294937e-05
7japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base2.745193654201281.39620996379208e-05