Chr:
Chr8
Start:
21478393
End:
21478414
Strand:
+
Sequence:
GCUCACUUCUCUUUCUGUCAGC
Length:
22
precursor sequence:
AGUUGACAGAAGAGAGUGAGCACACAGCGGCCAGACUGCAUCGAUCUAUCAAUCUUCCCUUCGACAGGAUAGCUAGAUAGAAAGAAAGAGAGGCCGUCGGCGGCCAUGGAAGAGAGAGAGAGAGAGAGAUGAAAUGAUGAUGAUGAUACAGCUGCCGCUGCGUGCUCACUUCUCUUUCUGUCAGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
51
NEP:
18.61%
LE_num:
LEP:
10.58%
ME_num:
MEP:
48.18%
HE_num:
HEP:
22.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
lamina_joint
Tau :
0.85
Avg Expression:
151.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 8.43087017088621 | 5.09238284013343e-07 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 7.93742878526049 | 2.69008887988208e-06 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -1.4945430948152 | 0.0266400786037349 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 7.46862978230824 | 7.86503769283341e-06 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 8.21331599547987 | 7.84130113323499e-07 |
| 6 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.37853814572906 | 4.13427991294937e-05 |
| 7 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.74519365420128 | 1.39620996379208e-05 |