Chr:
Chr8
Start:
19806531
End:
19806556
Strand:
+
Sequence:
AAGACGGAUGAUUAAAGUUGGACA
Length:
24
precursor sequence:
CGUAGCCAUGAGUUUUCUUGUCCAACUUUAAUUGUUCGUCUUAUUUAAUUUUUUUUUGAAAAAACUAAAAAACACAAGUCACGCAUAAACUACUAUUCAUGUUUUAUAAUCUAAUAACAAUAAAAAUACUAAUCAUACAAAAAUUUCAAAUAAGACGGAUGAUUAAAGUUGGACACGGAAACUCAUGGCUGCGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
1.82%
ME_num:
MEP:
46.72%
HE_num:
HEP:
51.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
188.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.01059159370939 | 8.79347220192048e-07 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.29641400631628 | 0.024641787948299 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.77566812284106 | 0.0112230271047277 |