| SRR2154070 | seed | Guangluai4_seed | 7.57 | HC |
| SRR2154071 | seed | KDM105_seed | 35.81 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 117.28 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 71.11 | HC |
| SRR8258050 | leaf_sheath | R_bph | 106.72 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 152.31 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 95.30 | HC |
| SRR7058097 | leaf | rice_mock | 148.93 | HC |
| SRR7058098 | leaf | rice_RSV | 123.09 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 54.75 | HC |
| SRR2154077 | seedling | KDM105_seedling | 50.98 | HC |
| SRR2154074 | seed | Nipponbare_seed | 363.03 | HC |
| SRR2154072 | seed | Rathuwee_seed | 14.05 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 6.31 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 19.53 | HC |
| SRR447128 | root | As(III) 20 uM | 319.69 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 76.88 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 88.45 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 138.72 | HC |
| SRR1013787 | panicle | PA64s_PA | 83.71 | HC |
| SRR1013788 | panicle | LYP9_PA | 32.67 | HC |
| SRR9070101 | shoot_base | WT_base | 63.28 | HC |
| SRR089619 | panicle | control | 8.75 | HC |
| SRR447135 | shoot | As(III) 20 uM | 102.46 | HC |
| SRR447134 | shoot | As(III) 80 uM | 1177.62 | HC |
| SRR447133 | shoot | As(III) 20 uM | 44.15 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 91.72 | HC |
| SRR447131 | root | As(III) 80 uM | 10.86 | HC |
| SRR447130 | root | As(III) 20 uM | 335.82 | HC |
| SRR1849765 | leaf | Control 30min | 49.55 | HC |
| SRR1849767 | leaf | Control 30min | 37.61 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 51.87 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 14.71 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 57.68 | HC |
| SRR6498701 | leaf | "WT, Control" | 53.46 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 64.79 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 10.31 | HC |
| SRR3203907 | leaf | WT | 25.55 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 41.68 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 11.14 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 5.97 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 7.28 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 17.86 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 9.58 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 13.91 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 25.88 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 108.28 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 90.16 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 80.71 | HC |
| SRR447129 | root | As(III) 80 uM | 10.79 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 45.91 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 59.63 | HC |
| SRR1849773 | leaf | Control 120min | 60.38 | HC |
| SRR1849772 | leaf | Control 120min | 36.03 | HC |
| SRR1849771 | leaf | Control 120min | 61.25 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 45.38 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 34.30 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 23.81 | HC |
| SRR3130370 | leaf | control 8 hour | 37.83 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 32.08 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 13.03 | HC |
| SRR7058096 | leaf | rice_mock | 221.72 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 7.37 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 787.65 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 40.03 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 82.53 | HC |
| SRR447136 | shoot | As(III) 80 uM | 66.99 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 73.95 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 36.70 | HC |
| SRR2154075 | seed | Taipei309_seed | 399.31 | HC |
| SRR976171 | lamina_joint | wild type | 28.76 | HC |
| SRR4098209 | leaf | No treatment | 32.83 | HC |
| SRR3130369 | leaf | control 8 hour | 28.06 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 30.03 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 63.19 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 92.87 | HC |
| SRR9070100 | shoot_base | WT_base | 69.40 | HC |
| SRR4098205 | seedling | Heat (50C) | 13.28 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 79.62 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 76.28 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 89.93 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 77.55 | HC |
| SRR3130365 | leaf | control 0 hour | 31.42 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 59.13 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 22.82 | HC |
| SRR3130366 | leaf | control 0 hour | 33.89 | HC |
| SRR2862364 | leaf | mock leaf cells | 69.81 | HC |
| SRR2862365 | leaf | mock leaf cells | 68.29 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 241.98 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 137.26 | HC |
| SRR2862363 | leaf | mock leaf cells | 246.85 | HC |
| SRR8649147 | panicle | panicle tissue | 38.77 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 85.58 | HC |
| SRR9070102 | shoot_base | WT_base | 55.58 | HC |
| SRR6498699 | leaf | "WT, Control" | 45.04 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 79.49 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 66.94 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 24.70 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 76.87 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 19.00 | HC |
| SRR4098203 | seedling | No treatment | 25.01 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 9.91 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 72.17 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 59.47 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 12.30 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 120.95 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 126.29 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 8.99 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 10.84 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 11.42 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 9.79 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 10.14 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 7.87 | HC |
| SRR3110556 | shoot | shoot control | 77.55 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 62.34 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 66.25 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 89.23 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 42.02 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 50.73 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 62.44 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 52.66 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 18.31 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 82.20 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 17.85 | HC |
| SRR2544786 | embryo | dry seed | 10.37 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 67.05 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 67.03 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 82.44 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 126.38 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 13.01 | HC |
| SRR8258048 | leaf_sheath | R_bph | 108.60 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 809.85 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 67.86 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 24.56 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 99.33 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 25.25 | HC |
| SRR1654490 | leaf | wild type | 400.28 | HC |
| SRR3110557 | shoot | shoot treated | 80.83 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 9.95 | HC |
| SRR8258051 | leaf_sheath | R_bph | 84.34 | HC |
| SRR504362 | leaf | NPB X 93-11 | 65.74 | HC |