RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 73

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR166a-5p	miRbase		Chr10	19987156	19987176	+	Y/Y
Osa-miR166a	miRbase/PmiREN	/	Chr10	19987244	19987264	+	Y/N
Osa-miR166f	miRbase/PmiREN	/	Chr10	14483305	14483325	-	Y/N
osa-miR398a	miRbase		Chr10	9216260	9216280	-	Y/N
osa-miR167f	miRbase		Chr10	14723126	14723146	-	Y/N
osa-miR171d-5p	miRbase		Chr10	21237325	21237345	+	Y/Y
Osa-miR171d	miRbase/PmiREN	/	Chr10	21237417	21237437	+	Y/N
osa-miR439b	miRbase		Chr10	5572957	5572977	+	Y/N
Osa-miR439e	miRbase/PmiREN	/	Chr10	15809263	15809285	-	N/N
osa-miR816	miRbase		Chr10	21808335	21808354	+	N/N
osa-miR820c	miRbase		Chr10	6928685	6928705	+	Y/N
osa-miR1438	miRbase		Chr10	8429630	8429651	+	N/N
osa-miR1846a-5p	miRbase		Chr10	529306	529326	+	Y/N
osa-miR1846a-3p	miRbase		Chr10	529335	529355	+	Y/Y
Osa-miR1862c	miRbase/PmiREN	/	Chr10	16093939	16093962	+	Y/N
Osa-miR1862d	miRbase/PmiREN	/	Chr10	4833700	4833723	+	Y/N
Osa-miR1876	miRbase/PmiREN	/	Chr10	4833470	4833493	+	Y/N
osa-miR1879	miRbase		Chr10	5635431	5635454	+	Y/N
osa-miR1882e-5p	miRbase		Chr10	10321011	10321034	-	N/N
Osa-miR1882e	miRbase/PmiREN	/	Chr10	10320914	10320937	-	N/Y
Osa-miR1428g	miRbase/PmiREN	/	Chr10	3961379	3961400	+	Y/N
osa-miR2095-5p	miRbase		Chr10	5931466	5931487	+	Y/N
osa-miR2095-3p	miRbase		Chr10	5931517	5931536	+	N/N
osa-miR2098-5p	miRbase		Chr10	18080280	18080299	-	N/N
osa-miR2098-3p	miRbase		Chr10	18080252	18080271	-	Y/N
osa-miR2922	miRbase		Chr10	22684298	22684317	-	N/N
osa-miR2929	miRbase		Chr10	1774340	1774360	-	N/N
osa-miR2932	miRbase		Chr10	10556709	10556727	+	N/N
osa-miR5080	miRbase		Chr10	2322030	2322050	-	N/N
osa-miR5504	miRbase		Chr10	17228177	17228197	-	Y/N
osa-miR5526	miRbase		Chr10	1584957	1584977	+	N/N
osa-miR5537	miRbase		Chr10	11112761	11112782	+	N/N
osa-miR5538	miRbase		Chr10	21337293	21337314	+	Y/N
osa-miR812q	miRbase		Chr10	18223589	18223612	+	Y/N
osa-miR5792	miRbase		Chr10	11842888	11842911	+	Y/Y
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR7694-5p	miRbase		Chr10	18864452	18864475	-	N/N
osa-miR7694-3p	miRbase		Chr10	18864382	18864403	-	Y/N
osa-miR5079b	miRbase		Chr10	10916069	10916090	-	N/N
osa-miR11344-5p	miRbase		Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase		Chr10	21166714	21166734	+	N/N
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miR1846f	PmiREN		Chr10	6857378	6857397	-	Y/N
Osa-miRN2335	PmiREN		Chr10	3687409	3687429	-	N/Y
Osa-miRN2314	PmiREN		Chr10	13966518	13966538	+	N/Y
Osa-miR5504	PmiREN		Chr10	17228178	17228197	-	Y/N
Osa-miR812a	PmiREN		Chr10	406243	406264	+	Y/N
Osa-miR812l	PmiREN		Chr10	13067089	13067110	-	Y/N
Osa-miR1122a	PmiREN		Chr10	18022132	18022152	+	N/N
Osa-miR1846a	PmiREN		Chr10	529306	529329	+	Y/N
Osa-miR167f	PmiREN		Chr10	14723125	14723146	-	Y/N
Osa-miRN221d	PmiREN		Chr10	10858115	10858134	-	Y/N
Osa-miR11337e	PmiREN		Chr10	17680744	17680764	-	Y/N
Osa-miR11337f	PmiREN		Chr10	6253608	6253628	-	N/N
Osa-miRN2267a	PmiREN		Chr10	11705913	11705933	+	N/Y
Osa-miR820c	PmiREN		Chr10	6928685	6928708	+	Y/N
Osa-miR5801b	PmiREN		Chr10	2141363	2141382	-	Y/N
Osa-miRN2370	PmiREN		Chr10	11863830	11863850	+	N/Y
Osa-miR439b	PmiREN		Chr10	5572955	5572978	+	Y/N
Osa-miRN2270	PmiREN		Chr10	10862757	10862776	+	Y/N
Osa-miR1862h	PmiREN		Chr10	3413461	3413482	-	Y/N
Osa-miR11339ac	PmiREN		Chr10	1429973	1429993	+	N/N
Osa-miR5795b	PmiREN		Chr10	6427387	6427408	-	Y/N
Osa-miRN2333	PmiREN		Chr10	14035811	14035831	+	N/N
Osa-miRN2334	PmiREN		Chr10	3705965	3705985	+	N/N
Osa-miR812ar	PmiREN		Chr10	19333224	19333243	+	Y/N
Osa-miR5537a	PmiREN		Chr10	11112761	11112782	+	N/N
Osa-miRN2285b	PmiREN		Chr10	3019375	3019394	-	Y/Y
Osa-miRN2237b	PmiREN		Chr10	10807210	10807231	-	Y/N
Osa-miRN2285a	PmiREN		Chr10	17481035	17481054	+	Y/Y
Osa-miRN57	RiceNCexp		Chr10	10505987	10506007	+	N/N
Osa-miRN58	RiceNCexp		Chr10	14483304	14483324	-	Y/Y
Osa-miRN59	RiceNCexp		Chr10	21237417	21237438	+	Y/N