Chr:
Chr8
Start:
2687961
End:
2687984
Strand:
+
Sequence:
GAACAGUCAAACGUUGGACACGGA
Length:
24
precursor sequence:
UAAGUGUAGCUAUGUAUUCCGUGUCCAACGUUUGAUCGUCCGUCUUAUUUGAAAAACUUAUAAAAAAUUAAAAAAAUAAGUCAUGCAUAAAGUACUAUUUAUGUUCUAUCAUCUAAUAACAAUAAAAAUAGUUUUUAGCAUCUAAUAACAAUAAAAAUAGUAAUCAUAAAAAAAUAAAACGAACAGUCAAACGUUGGACACGGAAACCUACAACUGUACUUAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.36%
LE_num:
LEP:
1.82%
ME_num:
MEP:
86.86%
HE_num:
HEP:
10.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
19.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -4.99564957285745 | 1.38783004912163e-32 |