Chr:
Chr8
Start:
22325694
End:
22325715
Strand:
+
Sequence:
AGAAAUACCCAAUAUCUUGCUG
Length:
22
precursor sequence:
UUUUUGAAGAAAGGAAAGCUAGAAAUACCCAAUAUCUUGCUGAAGCAAGAUAUUGGGUAUUUCUUUUUUUUUUAUUUUGAAUCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
13
NEP:
4.74%
LE_num:
LEP:
6.2%
ME_num:
MEP:
52.92%
HE_num:
HEP:
36.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.72
Avg Expression:
69.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.60920884306208 | 0.00575261421228897 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -5.81973882351044 | 2.35717379478157e-196 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -6.74100479096928 | 2.59580605935984e-185 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.53382155279239 | 1.33305967950273e-100 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -4.50173639842954 | 3.51759775526181e-17 |
| 6 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 6.3323899405032 | 9.48419422189686e-138 |
| 7 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.51403897876315 | 0.0407912546406301 |
| 8 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | 1.62311308264832 | 0.00504672695640201 |
| 9 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | 4.12776314017485 | 0.00254350963133172 |
| 10 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.88103767084849 | 3.94542571732091e-09 |
| 11 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.77096939419607 | 1.20554394405253e-13 |