| SRR3140955 | leaf | "45C, 12h" | 3.60 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 7.12 | MC |
| SRR10690152 | leaf | IRBB5_0h | 11.01 | MC |
| SRR6810106 | panicle | panicle | 0.87 | MC |
| SRR7058097 | leaf | rice_mock | 17.57 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 0.35 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.44 | MC |
| SRR10690151 | leaf | IRBB5_0h | 8.42 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.18 | MC |
| SRR2154071 | seed | KDM105_seed | 0.25 | MC |
| SRR1061625 | panicle | Heat Stress | 2.11 | MC |
| SRR1061624 | panicle | Normal | 0.40 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 11.52 | MC |
| SRR1061622 | flag_leaf | Normal | 5.08 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 14.23 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 6.39 | MC |
| SRR1013787 | panicle | PA64s_PA | 1.76 | MC |
| SRR504363 | leaf | 93-11 X NPB | 2.39 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.30 | MC |
| SRR1013789 | panicle | 93-11_PA | 1.19 | MC |
| SRR1013788 | panicle | LYP9_PA | 1.11 | MC |
| SRR9070101 | shoot_base | WT_base | 0.16 | MC |
| SRR6810105 | panicle | panicle | 0.95 | MC |
| SRR089619 | panicle | control | 2.89 | MC |
| SRR447134 | shoot | As(III) 80 uM | 12.79 | MC |
| SRR447133 | shoot | As(III) 20 uM | 22.72 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 1.84 | MC |
| SRR447131 | root | As(III) 80 uM | 1.85 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 1.27 | MC |
| SRR3203907 | leaf | WT | 1.53 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 2.04 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.35 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.49 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 0.64 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 0.85 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 2.65 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 2.60 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 3.13 | MC |
| SRR447129 | root | As(III) 80 uM | 0.96 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 11.88 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 9.56 | MC |
| SRR3130370 | leaf | control 8 hour | 8.98 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 9.02 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 3.08 | MC |
| SRR7058096 | leaf | rice_mock | 15.56 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.52 | MC |
| SRR447136 | shoot | As(III) 80 uM | 4.20 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.85 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 1.41 | MC |
| SRR2154075 | seed | Taipei309_seed | 0.43 | MC |
| SRR3140952 | leaf | "45C, 0h" | 8.86 | MC |
| SRR4098208 | root | No treatment | 1.17 | MC |
| SRR3130369 | leaf | control 8 hour | 5.75 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 2.85 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.54 | MC |
| SRR9070100 | shoot_base | WT_base | 0.21 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 8.67 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.51 | MC |
| SRR3130365 | leaf | control 0 hour | 7.57 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.67 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 3.44 | MC |
| SRR3130366 | leaf | control 0 hour | 3.71 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 1.67 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 2.21 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 1.87 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 13.58 | MC |
| SRR2862363 | leaf | mock leaf cells | 8.67 | MC |
| SRR8649147 | panicle | panicle tissue | 0.32 | MC |
| SRR4098207 | panicle | No treatment | 3.43 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.86 | MC |
| SRR9070102 | shoot_base | WT_base | 0.16 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.40 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 11.35 | MC |
| SRR10690144 | leaf | IR24_0h | 4.19 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 7.30 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 9.26 | MC |
| SRR10690143 | leaf | IR24_0h | 6.15 | MC |
| SRR10690142 | leaf | IR24_0h | 5.81 | MC |
| SRR2646852 | panicle | FP | 0.56 | MC |
| SRR2646853 | panicle | FP | 0.72 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 15.33 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 6.47 | MC |
| SRR2646855 | panicle | SP | 0.63 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 2.81 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 2.99 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 2.94 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 0.28 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.88 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.78 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 5.02 | MC |
| SRR6365693 | panicle | Wild type | 2.16 | MC |
| SRR6365694 | panicle | Wild type | 1.41 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 4.43 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 0.60 | MC |
| SRR6810101 | seedling | seedling | 10.18 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 1.96 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 3.94 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 4.84 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 6.55 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 8.47 | MC |
| SRR1849784 | root | Control 120min | 1.05 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.51 | MC |
| SRR10690153 | leaf | IRBB5_0h | 2.97 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.43 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 0.51 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.60 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.61 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 2.81 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 5.12 | MC |
| SRR3110556 | shoot | shoot control | 27.22 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 6.38 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.62 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 22.33 | MC |
| SRR1061616 | panicle | Normal | 1.28 | MC |
| SRR1061614 | panicle | Normal | 2.31 | MC |
| SRR1061615 | panicle | Heat Stress | 3.52 | MC |
| SRR1061612 | panicle | Normal | 1.13 | MC |
| SRR1061613 | panicle | Heat Stress | 4.19 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 1.05 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 5.60 | MC |
| SRR6810103 | flag_leaf | flag_leaf | 10.52 | MC |
| SRR1061618 | flag_leaf | Normal | 6.47 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 8.84 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 10.60 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 1.60 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.70 | MC |
| SRR089621 | panicle | cold | 7.42 | MC |
| SRR089620 | panicle | drought | 5.31 | MC |
| SRR089622 | panicle | salt | 2.50 | MC |
| SRR504360 | leaf | Nipponbare | 1.81 | MC |
| SRR504361 | leaf | Nov-93 | 4.62 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.79 | MC |
| SRR2544786 | embryo | dry seed | 0.48 | MC |
| SRR6810102 | seedling | seedling | 6.25 | MC |
| SRR10956502 | panicle | WT | 2.24 | MC |
| SRR10956501 | panicle | WT | 2.16 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 1.33 | MC |
| SRR1740023 | seedling | IR64-Control | 3.14 | MC |
| SRR1740025 | seedling | PK-Control | 6.92 | MC |
| SRR1740024 | seedling | N22-Control | 11.76 | MC |
| SRR1654490 | leaf | wild type | 3.37 | MC |
| SRR5940086 | panicle | Wild type | 1.82 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.44 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.52 | MC |
| SRR504362 | leaf | NPB X 93-11 | 5.25 | MC |