Chr:
Chr8
Start:
10041686
End:
10041706
Strand:
+
Sequence:
UAUGAAUGUGUGCAAUGCUAG
Length:
21
precursor sequence:
UUCACAAUGUAAGACUUUCUAGCAUUGCCCACAUUCAUAUAGAUGUUAAUGAAUCUAGGCAUAUAUAUGUGUCUAGAUUCAUUAACAUAUAUAUGAAUGUGUGCAAUGCUAGAAAGUCUUACAUUAUGAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
77
NEP:
28.1%
LE_num:
LEP:
16.42%
ME_num:
MEP:
50.73%
HE_num:
HEP:
4.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.74
Avg Expression:
8.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.50310673342863 | 2.1732235452033e-08 |
2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -1.16208582872649 | 0.00998523812847308 |