Chr:
Chr8
Start:
27821214
End:
27821237
Strand:
+
Sequence:
ACGGAAAAUCAUGGCUGCACUUAA
Length:
24
precursor sequence:
AACUACCUCCAUCACAUUAUAAGUGCAACCAUGAGUUUUUAUGCCUAACUUUGUUCUUUUGUCUUAUUUGAAAUUUUUUUAUAAUUAGUAUUUUUAUUGUUAUGAGAUGAUAAAACAUGAGUAGCACUUUACACGUGACUUAUGUUUUAAAUUUUUUUAUUUUUUUUAAAUAAGGCGGACGAUCAAAGUUGUGCACGGAAAAUCAUGGCUGCACUUAAAAUGGGACUGAGGAAGUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
17
NEP:
6.2%
LE_num:
LEP:
12.41%
ME_num:
MEP:
71.9%
HE_num:
HEP:
9.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.90
Avg Expression:
29.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 1.63404178817712 | 2.74181325012119e-05 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.30935107764343 | 0.0384691363412909 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.17855846215186 | 0.00934402114600947 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -3.0244520056781 | 0.0239513794820465 |