Chr:
Chr8
Start:
15132802
End:
15132823
Strand:
-
Sequence:
CGGUCUUGAGGCAGGAACUGAG
Length:
22
precursor sequence:
GUGUUGCAUAUUCUUAGGCCCGGUCUUGAGGCAGGAACUGAGUAGUUGGUGAACUCGCUCUAUGUUGUUCGUUCACUCGCGACACAGUUCCUGUCCCAAGGCUAAGUCUGUGAAUAUAUAAAUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
67
NEP:
24.45%
LE_num:
LEP:
14.6%
ME_num:
MEP:
44.16%
HE_num:
HEP:
16.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.94
Avg Expression:
118.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 4.94465119896134 | 0.0237838629630838 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -3.97633447839041 | 0.0141261623672873 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -5.77400400952196 | 2.27845809367666e-22 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.81693442974571 | 2.79190950524468e-12 |