Chr:
Chr8
Start:
26817569
End:
26817589
Strand:
+
Sequence:
GGGCAGUCUCCUUGGCUAGCC
Length:
21
precursor sequence:
AUAGCCAAGGAUGACUUGCCUGUGUCCUCCCUGAAGGAUUAGCAAUUUAAUGAUCCUUUAAGCUGGUUCAUGGGCAGUCUCCUUGGCUAGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
29
NEP:
10.58%
LE_num:
LEP:
13.87%
ME_num:
MEP:
35.04%
HE_num:
HEP:
40.51%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.81
Avg Expression:
122.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -2.71267620752022 | 0.0028494211523732 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -1.40043740202456 | 0.0166189529166848 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.5179896715987 | 6.0661571127002e-35 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.56657018620723 | 1.73860938985459e-39 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.61379667379513 | 0.00465709816854972 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.03028829919448 | 0.000124004620676778 |
| 7 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.16164195347193 | 0.0143234833385483 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.12088818777631 | 0.0428610019866906 |