RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 117

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR1429-5p	miRbase		Chr8	2037052	2037072	-	N/Y
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
Osa-miR1857	miRbase/PmiREN	/	Chr11	2734001	2734021	+	N/Y
Osa-miR1870	miRbase/PmiREN	/	Chr6	21164798	21164821	+	N/Y
Osa-miR1882e	miRbase/PmiREN	/	Chr10	10320914	10320937	-	N/Y
osa-miR2101-3p	miRbase		Chr12	17986766	17986787	+	N/Y
Osa-miR2118a	miRbase/PmiREN	/	Chr4	21642950	21642971	-	N/Y
osa-miR2118i	miRbase		Chr4	21652426	21652447	-	N/Y
osa-miR2118l	miRbase		Chr4	21656743	21656764	-	N/Y
osa-miR2864.1	miRbase		Chr12	25664791	25664811	-	N/Y
Osa-miR2867	miRbase/PmiREN	/	Chr11	16277721	16277740	+	N/Y
osa-miR1862f	miRbase		none	none	none	none	N/Y
Osa-miR1862g	miRbase/PmiREN	/	Chr4	20340401	20340422	-	N/Y
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5791	miRbase		Chr12	24374520	24374540	+	N/Y
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5798	miRbase		Chr7	6672130	6672150	-	N/Y
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
osa-miR5818	miRbase		Chr4	13157349	13157369	+	N/Y
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miRN2351	PmiREN		Chr12	24395829	24395849	-	N/Y
Osa-miRN2321	PmiREN		Chr2	10642797	10642817	+	N/Y
Osa-miRN2320	PmiREN		Chr1	19145141	19145161	-	N/Y
Osa-miRN2327	PmiREN		Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN		Chr5	13984508	13984528	-	N/Y
Osa-miRN2335	PmiREN		Chr10	3687409	3687429	-	N/Y
Osa-miRN2267b	PmiREN		Chr12	14534590	14534610	+	N/Y
Osa-miRN2313	PmiREN		Chr12	21182132	21182152	-	N/Y
Osa-miRN2324	PmiREN		Chr4	17663211	17663231	+	N/Y
Osa-miRN2314	PmiREN		Chr10	13966518	13966538	+	N/Y
Osa-miRN2303b	PmiREN		Chr6	14075614	14075634	+	N/Y
Osa-miR2275g	PmiREN		Chr8	4404028	4404049	-	N/Y
Osa-miR2275h	PmiREN		Chr8	4384923	4384944	-	N/Y
Osa-miRN2329	PmiREN		Chr6	9654155	9654175	+	N/Y
Osa-miRN2303a	PmiREN		Chr6	13311859	13311879	+	N/Y
Osa-miRN2255	PmiREN		Chr11	27317151	27317171	+	N/Y
Osa-miRN2317	PmiREN		Chr12	21907561	21907581	-	N/Y
Osa-miRN2346	PmiREN		Chr5	6099540	6099560	+	N/Y
Osa-miRN2345	PmiREN		Chr4	21226048	21226068	-	N/Y
Osa-miRN2343	PmiREN		Chr3	26841668	26841688	+	N/Y
Osa-miRN2340	PmiREN		Chr1	13885903	13885923	-	N/Y
Osa-miRN2349	PmiREN		Chr9	6623796	6623816	+	N/Y
Osa-miRN2264	PmiREN		Chr9	13604993	13605013	+	N/Y
Osa-miRN2358	PmiREN		Chr3	32278135	32278155	-	N/Y
Osa-miRN2359	PmiREN		Chr4	13137356	13137376	-	N/Y
Osa-miRN2337	PmiREN		Chr12	21000978	21000998	+	N/Y
Osa-miRN2364	PmiREN		Chr6	28324494	28324514	+	N/Y
Osa-miRN2256	PmiREN		Chr4	20988745	20988765	+	N/Y
Osa-miRN2315	PmiREN		Chr11	16391272	16391292	+	N/Y
Osa-miRN2322	PmiREN		Chr2	12296437	12296457	+	N/Y
Osa-miRN2330	PmiREN		Chr9	9298242	9298262	+	N/Y
Osa-miRN2267c	PmiREN		Chr1	28420010	28420030	-	N/Y
Osa-miRN2331	PmiREN		Chr9	9324615	9324635	+	N/Y
Osa-miRN2267d	PmiREN		Chr6	11137339	11137359	+	N/Y
Osa-miRN2308	PmiREN		Chr9	8761068	8761088	+	N/Y
Osa-miRN2267a	PmiREN		Chr10	11705913	11705933	+	N/Y
Osa-miRN2302	PmiREN		Chr5	8249359	8249379	+	N/Y
Osa-miRN2301	PmiREN		Chr1	11883749	11883769	-	N/Y
Osa-miRN2307	PmiREN		Chr8	17084861	17084881	+	N/Y
Osa-miRN2306	PmiREN		Chr8	1202343	1202363	+	N/Y
Osa-miRN2305	PmiREN		Chr7	6722807	6722827	-	N/Y
Osa-miRN2288	PmiREN		Chr2	1523682	1523702	+	N/Y
Osa-miRN2286	PmiREN		Chr11	16646688	16646708	-	N/Y
Osa-miRN2287	PmiREN		Chr11	9449683	9449703	+	N/Y
Osa-miRN2372	PmiREN		Chr11	24569670	24569690	-	N/Y
Osa-miRN2370	PmiREN		Chr10	11863830	11863850	+	N/Y
Osa-miRN2376	PmiREN		Chr5	13976622	13976642	+	N/Y
Osa-miRN2377	PmiREN		Chr6	28293791	28293811	+	N/Y
Osa-miR1862f	PmiREN		Chr3	29954038	29954057	+	N/Y
Osa-miRN2272	PmiREN		Chr12	22069226	22069246	-	N/Y
Osa-miRN2274	PmiREN		Chr6	9588773	9588793	+	N/Y
Osa-miRN2323c	PmiREN		Chr9	15088792	15088812	-	N/Y
Osa-miRN2323b	PmiREN		Chr7	16779471	16779491	-	N/Y
Osa-miRN2323a	PmiREN		Chr3	23448549	23448569	+	N/Y
Osa-miRN2338	PmiREN		Chr12	22033257	22033277	+	N/Y
Osa-miRN2339	PmiREN		Chr12	24831791	24831811	+	N/Y
Osa-miRN2295	PmiREN		Chr12	24290567	24290587	+	N/Y
Osa-miRN2297	PmiREN		Chr12	21727741	21727761	-	N/Y
Osa-miRN2293	PmiREN		Chr4	18680363	18680382	-	N/Y
Osa-miRN2299	PmiREN		Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN		Chr12	16207990	16208010	+	N/Y
Osa-miRN2260b	PmiREN		Chr6	27970697	27970717	-	N/Y
Osa-miRN2294	PmiREN		Chr9	9174506	9174526	+	N/Y
Osa-miRN2290	PmiREN		Chr8	10061176	10061196	-	N/Y
Osa-miRN2369	PmiREN		Chr12	14944232	14944252	+	N/Y
Osa-miRN2366	PmiREN		Chr7	15967943	15967963	-	N/Y
Osa-miRN2363	PmiREN		Chr6	24709936	24709956	+	N/Y
Osa-miRN2228a	PmiREN		Chr4	4926830	4926850	-	N/Y
Osa-miRN29	RiceNCexp		Chr3	31059086	31059106	-	N/Y
Osa-miRN31	RiceNCexp		Chr3	33130637	33130656	+	N/Y
Osa-miRN52	RiceNCexp		Chr9	8126542	8126561	-	N/Y
Osa-miRN61	RiceNCexp		Chr11	7807330	7807350	+	N/Y
Osa-miRN66	RiceNCexp		Chr11	19480234	19480253	+	N/Y