Chr:
Chr8
Start:
8702823
End:
8702846
Strand:
-
Sequence:
UAUGGAUGGAGGUGUAACCCGAUG
Length:
24
precursor sequence:
UUAGUACAGUGGUGAAGACAUAGGGCUACUACACCAUCCAUAAGGGUUCGAAUCUUCGAUGUGCCUAGAUAGGGUACAGUUGGAUCCCAUAUGGAUGGAGGUGUAACCCGAUGCCUUUUACAAAUAGAUGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
42
NEP:
15.33%
LE_num:
LEP:
16.79%
ME_num:
MEP:
51.09%
HE_num:
HEP:
16.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosperm
Tau :
0.98
Avg Expression:
943.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.02123841289768 | 0.000516745910124902 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -3.73395613513901 | 0.0147791051311051 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 3.08534272010609 | 0.00959417487670442 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.01896802837123 | 0.000803781898576454 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.44488416339788 | 1.24198155234415e-11 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.10291014490473 | 1.60132120771253e-06 |