Chr:
Chr8
Start:
26813907
End:
26813927
Strand:
+
Sequence:
UAGCCAAGGAUGACUUGCCUG
Length:
21
precursor sequence:
GUGAUGAGAGUGAGUCCUGGUAGCCAAGGAUGACUUGCCUGUAUAUUUAUAUAUAUAUGUGUGUGUGAUCAAUGGAUGGAUUGAUCAAGCUGCUUGCAGGCUCAUGCAUAUAUAUGUACAGGCAGUCUCCUUGGCUAGCCCGGCUACCUCUUAUCCUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
13.5%
ME_num:
MEP:
36.86%
HE_num:
HEP:
43.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.96
Avg Expression:
347.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 3.04809200501012 | 0.00424038379473297 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -5.45844934622378 | 1.77500627822128e-32 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.51544165428649 | 1.95103289390072e-30 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 2.27094638826174 | 9.01125258555319e-05 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.85035361514667 | 1.02987997915294e-06 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 2.23865242730137 | 1.36064957279685e-12 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.62205352767444 | 3.62445553966926e-26 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.06257928447496 | 7.63724833595412e-11 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 2.18438908549473 | 2.62339357691588e-42 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.22087852857273 | 3.82164999330854e-11 |