Chr:
Chr8
Start:
3955932
End:
3955955
Strand:
-
Sequence:
GUGCUGGCGAGCUCCGGUGCCGCA
Length:
24
precursor sequence:
CGGAGGAAGGAGGCCGGCGCACAGAGGACGAGAGGUGACGGCGCGUGGGGAGGGAGGAAACAGUGCCUAGUGCGGCGCCGGAGCUCGCCAGCACGCGGAAGGAGGUAGCGGCGGUGGCGGAGCGCCGGCAAGCUCUCCGCGCCCUGGCCGCCGUCCUCCUCACCUCACUCCUGCGUGCUGGCGAGCUCCGGUGCCGCACUAGGCACCGUUCCCUCCCUCCCCGCGCGCCAUCACCGCUCGUCCUCUGUGCGCCGGCCUCCUUCCUCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
30
NEP:
10.95%
LE_num:
LEP:
9.12%
ME_num:
MEP:
77.01%
HE_num:
HEP:
2.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.78
Avg Expression:
9.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.40235063956193 | 0.00693971573145776 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.39259126764354 | 0.0275322289069369 |