Chr:
Chr8
Start:
17848878
End:
17848899
Strand:
-
Sequence:
UAAAUGUAUGACGCUGUUGACU
Length:
22
precursor sequence:
CCUUAUACUACCGCUGUUUUUAAAUGUAUGACGCUGUUGACUUUUGAAAAUGACGUUUAACCAUUCACCUUAUUAAAAAAUUAUUGUAAAUAUGCAAAAAUAUAAGUUAUGGCAACAAAAUACGGAGUAAACGAUUUUUUUUAAUAAGAUGAAUGGUCAAAUGUUAUAUCCACAAGUCAACGUCAUACAUUUCAAAACUGAGGUAGUAAUAGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
18
NEP:
6.57%
LE_num:
LEP:
9.49%
ME_num:
MEP:
74.09%
HE_num:
HEP:
9.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.71
Avg Expression:
10.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.2067993131404 | 2.16042536512647e-05 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.72692198490293 | 2.57078238605354e-06 |