RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 194

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156a	miRbase/PmiREN	/	Chr1	22524221	22524240	-	Y/Y
Osa-miR156b	miRbase/PmiREN	/	Chr1	4666383	4666402	+	Y/Y
osa-miR156b-3p	miRbase		Chr1	4666450	4666470	+	Y/Y
Osa-miR156c	miRbase/PmiREN	/	Chr1	4666003	4666022	+	Y/Y
osa-miR156c-3p	miRbase		Chr1	4666074	4666095	+	Y/Y
osa-miR156d	miRbase		Chr2	4512974	4512993	-	Y/Y
Osa-miR156e	miRbase/PmiREN	/	Chr4	25026402	25026421	-	Y/Y
osa-miR156f-5p	miRbase		Chr8	21478233	21478252	+	Y/Y
Osa-miR156g	miRbase/PmiREN	/	Chr9	15065256	15065275	+	Y/Y
osa-miR156g-3p	miRbase		Chr9	15065346	15065367	+	Y/Y
osa-miR156h-5p	miRbase		Chr8	21491235	21491254	+	Y/Y
Osa-miR156i	miRbase/PmiREN	/	Chr2	24120063	24120082	-	Y/Y
osa-miR156j-5p	miRbase		Chr6	26554836	26554855	+	Y/Y
osa-miR160c-3p	miRbase		Chr8	1707642	1707662	+	Y/Y
osa-miR166a-5p	miRbase		Chr10	19987156	19987176	+	Y/Y
osa-miR166b-5p	miRbase		Chr6	30327248	30327268	-	Y/Y
osa-miR166c-5p	miRbase		Chr3	3487799	3487818	+	Y/Y
Osa-miR166e	miRbase/PmiREN	/	Chr3	765735	765755	+	Y/Y
osa-miR167c-3p	miRbase		Chr3	33130741	33130763	+	Y/Y
osa-miR169a	miRbase		Chr1	8729141	8729161	+	Y/Y
Osa-miR393a	miRbase/PmiREN	/	Chr1	2309233	2309253	-	Y/Y
Osa-miR396a	miRbase/PmiREN	/	Chr2	34280394	34280414	+	Y/Y
osa-miR396a-3p	miRbase		Chr2	34280509	34280528	+	Y/Y
Osa-miR396b	miRbase/PmiREN	/	Chr6	3669659	3669679	+	Y/Y
osa-miR396b-3p	miRbase		Chr6	3669736	3669755	+	Y/Y
osa-miR397a	miRbase		Chr6	28489795	28489815	+	Y/Y
osa-miR397b	miRbase		Chr2	3280868	3280888	-	Y/Y
osa-miR398b	miRbase		Chr7	14598627	14598647	-	Y/Y
Osa-miR399a	miRbase/PmiREN	/	Chr1	30478754	30478774	+	Y/Y
Osa-miR399b	miRbase/PmiREN	/	Chr2	7664036	7664056	-	Y/Y
Osa-miR399c	miRbase/PmiREN	/	Chr5	26305948	26305968	-	Y/Y
Osa-miR399k	miRbase/PmiREN	/	Chr5	26311328	26311348	+	Y/Y
Osa-miR156l	miRbase/PmiREN	/	Chr5	5230619	5230639	+	Y/Y
osa-miR159c	miRbase		Chr1	6556058	6556078	-	Y/Y
osa-miR159d	miRbase		Chr1	6563766	6563786	-	Y/Y
osa-miR159e	miRbase		Chr1	9760718	9760738	-	Y/Y
Osa-miR164e	miRbase/PmiREN	/	Chr3	10542167	10542187	+	Y/Y
osa-miR167d-3p	miRbase		Chr7	4166303	4166324	-	Y/Y
osa-miR169f.2	miRbase		Chr2	18558482	18558502	-	Y/Y
Osa-miR169h	miRbase/PmiREN	/	Chr8	26807359	26807379	+	Y/Y
osa-miR169i-5p.2	miRbase		Chr8	26803136	26803157	+	Y/Y
Osa-miR169i	miRbase/PmiREN	/	Chr8	26803159	26803179	+	Y/Y
Osa-miR169j	miRbase/PmiREN	/	Chr9	19788871	19788891	+	Y/Y
Osa-miR169k	miRbase/PmiREN	/	Chr9	19792143	19792163	+	Y/Y
Osa-miR169l	miRbase/PmiREN	/	Chr8	26817498	26817518	+	Y/Y
Osa-miR169m	miRbase/PmiREN	/	Chr8	26813907	26813927	+	Y/Y
Osa-miR169n	miRbase/PmiREN	/	Chr11	6085398	6085418	-	Y/Y
Osa-miR169o	miRbase/PmiREN	/	Chr11	6081670	6081690	-	Y/Y
osa-miR171d-5p	miRbase		Chr10	21237325	21237345	+	Y/Y
osa-miR171f-5p	miRbase		Chr3	30027786	30027806	+	Y/Y
osa-miR171g	miRbase		Chr7	15636754	15636774	-	Y/Y
osa-miR166h-5p	miRbase		Chr2	32435260	32435280	-	Y/Y
osa-miR171h	miRbase		Chr4	28482509	28482529	+	Y/Y
osa-miR393b-5p	miRbase		Chr4	34931960	34931981	-	Y/Y
osa-miR393b-3p	miRbase		Chr4	34931885	34931905	-	Y/Y
osa-miR408-5p	miRbase		Chr1	12301691	12301711	+	Y/Y
osa-miR172d-5p	miRbase		Chr2	35143626	35143645	-	Y/Y
osa-miR166m	miRbase		Chr8	23045502	23045522	+	Y/Y
osa-miR444a-5p	miRbase		none	none	none	none	Y/Y
osa-miR530-5p	miRbase		Chr4	8303665	8303684	-	Y/Y
osa-miR530-3p	miRbase		Chr4	8303546	8303566	-	Y/Y
Osa-miR529b	miRbase/PmiREN	/	Chr4	15883042	15883062	+	Y/Y
osa-miR1430	miRbase		Chr12	6825025	6825045	-	Y/Y
Osa-miR1431	miRbase/PmiREN	/	Chr1	4766355	4766375	-	Y/Y
osa-miR1432-5p	miRbase		Chr7	23401784	23401804	-	Y/Y
osa-miR1432-3p	miRbase		Chr7	23401707	23401727	-	Y/Y
osa-miR810b.2	miRbase		Chr11	959609	959629	-	Y/Y
osa-miR1846d-3p	miRbase		Chr1	39637151	39637170	+	Y/Y
Osa-miR1856	miRbase/PmiREN	/	Chr11	10376266	10376286	-	Y/Y
osa-miR1846a-3p	miRbase		Chr10	529335	529355	+	Y/Y
Osa-miR1846b	miRbase/PmiREN	/	Chr11	27715852	27715872	-	Y/Y
Osa-miR1859	miRbase/PmiREN	/	Chr1	673288	673309	-	Y/Y
Osa-miR1861b	miRbase/PmiREN	/	Chr2	20715979	20716000	+	Y/Y
Osa-miR1861f	miRbase/PmiREN	/	Chr5	18668414	18668435	+	Y/Y
Osa-miR1861h	miRbase/PmiREN	/	Chr6	27238262	27238283	-	Y/Y
Osa-miR1861i	miRbase/PmiREN	/	Chr6	14949513	14949534	+	Y/Y
Osa-miR1861j	miRbase/PmiREN	/	Chr8	15132802	15132823	-	Y/Y
Osa-miR1861l	miRbase/PmiREN	/	Chr9	13532448	13532469	+	Y/Y
osa-miR1861n	miRbase		Chr12	16586629	16586650	-	Y/Y
Osa-miR1866	miRbase/PmiREN	/	Chr3	6510880	6510903	+	Y/Y
osa-miR1866-3p	miRbase		Chr3	6510921	6510942	+	Y/Y
osa-miR1868	miRbase		Chr4	19715494	19715517	+	Y/Y
osa-miR1870-3p	miRbase		Chr6	21164894	21164917	+	Y/Y
osa-miR1874-5p	miRbase		Chr8	8702892	8702915	-	Y/Y
Osa-miR1874	miRbase/PmiREN	/	Chr8	8702823	8702846	-	Y/Y
Osa-miR1877	miRbase/PmiREN	/	Chr9	21044089	21044112	+	Y/Y
Osa-miR1320	miRbase/PmiREN	/	Chr6	5073570	5073590	-	Y/Y
osa-miR1320-3p	miRbase		Chr6	5073521	5073541	-	Y/Y
osa-miR396f-3p	miRbase		Chr2	35636554	35636577	-	Y/Y
Osa-miR2118b	miRbase/PmiREN	/	Chr4	21645323	21645344	-	Y/Y
Osa-miR2118c	miRbase/PmiREN	/	Chr4	21647968	21647991	-	Y/Y
Osa-miR2118d	miRbase/PmiREN	/	Chr4	21647727	21647748	-	Y/Y
Osa-miR2118f	miRbase/PmiREN	/	Chr4	21650553	21650574	-	Y/Y
Osa-miR2118g	miRbase/PmiREN	/	Chr4	21650339	21650360	-	Y/Y
Osa-miR2118h	miRbase/PmiREN	/	Chr4	21652679	21652700	-	Y/Y
Osa-miR2118j	miRbase/PmiREN	/	Chr4	21654635	21654656	-	Y/Y
Osa-miR2118k	miRbase/PmiREN	/	Chr4	21656982	21657003	-	Y/Y
Osa-miR2118m	miRbase/PmiREN	/	Chr4	21658892	21658913	-	Y/Y
Osa-miR2118n	miRbase/PmiREN	/	Chr4	21661532	21661555	-	Y/Y
osa-miR2118q	miRbase		Chr11	7810747	7810768	-	Y/Y
osa-miR2871b-5p	miRbase		Chr4	8340811	8340834	+	Y/Y
osa-miR1863c	miRbase		Chr12	4869465	4869488	+	Y/Y
Osa-miR2880	miRbase/PmiREN	/	Chr3	22741628	22741651	+	Y/Y
Osa-miR396g	miRbase/PmiREN	/	Chr6	5300640	5300660	-	Y/Y
osa-miR396h	miRbase		Chr2	32841771	32841791	+	Y/Y
Osa-miR396d	miRbase/PmiREN	/	Chr2	27728695	27728715	-	Y/Y
osa-miR812k	miRbase		none	none	none	none	Y/Y
osa-miR812l	miRbase		none	none	none	none	Y/Y
Osa-miR812m	miRbase/PmiREN	/	Chr8	20574810	20574833	+	Y/Y
osa-miR3979-5p	miRbase		Chr11	19480162	19480181	+	Y/Y
osa-miR3979-3p	miRbase		Chr11	19480234	19480253	+	Y/Y
osa-miR3982-3p	miRbase		Chr11	1384745	1384765	-	Y/Y
osa-miR5144-3p	miRbase		Chr1	25326399	25326419	-	Y/Y
osa-miR2863c	miRbase		Chr2	29869574	29869597	+	Y/Y
osa-miR5509	miRbase		Chr11	24258785	24258805	-	Y/Y
osa-miR2275c	miRbase		Chr7	16719848	16719870	-	Y/Y
osa-miR5515	miRbase		Chr4	17244231	17244251	+	Y/Y
osa-miR2275d	miRbase		Chr8	3736826	3736847	-	Y/Y
osa-miR5792	miRbase		Chr10	11842888	11842911	+	Y/Y
osa-miR5793	miRbase		Chr11	24289002	24289022	+	Y/Y
osa-miR5794	miRbase		none	none	none	none	Y/Y
osa-miR812u	miRbase		Chr11	8663591	8663614	-	Y/Y
osa-miR5806	miRbase		Chr6	24708676	24708696	+	Y/Y
osa-miR7695-3p	miRbase		Chr1	11666852	11666872	-	Y/Y
Osa-miR397b	PmiREN		Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN		Chr6	28489798	28489818	+	Y/Y
Osa-miR3979	PmiREN		Chr11	19480162	19480182	+	Y/Y
Osa-miR1846g	PmiREN		Chr11	21603039	21603059	-	Y/Y
Osa-miR2118l	PmiREN		Chr11	7810747	7810768	-	Y/Y
Osa-miRN2278	PmiREN		Chr2	20259532	20259552	+	Y/Y
Osa-miR3982	PmiREN		Chr11	1384746	1384766	-	Y/Y
Osa-miR393b	PmiREN		Chr4	34931961	34931981	-	Y/Y
Osa-miRN2232i	PmiREN		Chr12	24283404	24283424	-	Y/Y
Osa-miR2275d	PmiREN		Chr8	3736892	3736912	-	Y/Y
Osa-miR2275c	PmiREN		Chr7	16719850	16719870	-	Y/Y
Osa-miR2275i	PmiREN		Chr7	16719646	16719666	-	Y/Y
Osa-miRN2222	PmiREN		Chr12	13410165	13410185	+	Y/Y
Osa-miR156j	PmiREN		Chr6	26554835	26554855	+	Y/Y
Osa-miR156f	PmiREN		Chr8	21478232	21478252	+	Y/Y
Osa-miR156d	PmiREN		Chr2	4512974	4512994	-	Y/Y
Osa-miRN2319	PmiREN		Chr12	24317901	24317921	+	Y/Y
Osa-miR2275j	PmiREN		Chr8	3736692	3736712	-	Y/Y
Osa-miR398	PmiREN		Chr7	14598627	14598647	-	Y/Y
Osa-miR399l	PmiREN		Chr6	20890950	20890970	+	Y/Y
Osa-miR159d	PmiREN		Chr1	6563767	6563786	-	Y/Y
Osa-miR159e	PmiREN		Chr1	9760719	9760738	-	Y/Y
Osa-miR159c	PmiREN		Chr1	6556059	6556078	-	Y/Y
Osa-miR156m	PmiREN		Chr8	21491234	21491254	+	Y/Y
Osa-miR1863	PmiREN		Chr12	4869464	4869489	+	Y/Y
Osa-miRN2312	PmiREN		Chr6	24608747	24608767	-	Y/Y
Osa-miRN2300	PmiREN		Chr1	34289922	34289942	+	Y/Y
Osa-miRN2304	PmiREN		Chr6	24723463	24723483	-	Y/Y
Osa-miRN2328	PmiREN		Chr6	9669276	9669296	-	Y/Y
Osa-miRN2289	PmiREN		Chr8	18629272	18629292	-	Y/Y
Osa-miRN1879	PmiREN		Chr7	26333238	26333257	+	Y/Y
Osa-miR2863a	PmiREN		Chr2	29869574	29869597	+	Y/Y
Osa-miR1862a	PmiREN		Chr5	1928707	1928726	+	Y/Y
Osa-miRN2273	PmiREN		Chr3	32487508	32487528	+	Y/Y
Osa-miRN2275	PmiREN		Chr4	17660213	17660233	+	Y/Y
Osa-miRN2371	PmiREN		Chr11	25080569	25080589	-	Y/Y
Osa-miR171h	PmiREN		Chr4	28482510	28482530	+	Y/Y
Osa-miR171g	PmiREN		Chr7	15636749	15636770	-	Y/Y
Osa-miR1861g	PmiREN		Chr12	16586413	16586433	-	Y/Y
Osa-miR812ad	PmiREN		Chr6	30201985	30202008	-	Y/Y
Osa-miR812ae	PmiREN		Chr3	17638738	17638761	+	Y/Y
Osa-miR166m	PmiREN		Chr8	23045502	23045521	+	Y/Y
Osa-miR812am	PmiREN		Chr6	21245498	21245521	-	Y/Y
Osa-miRN2296	PmiREN		Chr12	24862194	24862214	+	Y/Y
Osa-miR812ah	PmiREN		Chr3	35561723	35561746	-	Y/Y
Osa-miR482	PmiREN		Chr4	21654404	21654425	-	Y/Y
Osa-miR1432	PmiREN		Chr7	23401783	23401804	-	Y/Y
Osa-miRN2285b	PmiREN		Chr10	3019375	3019394	-	Y/Y
Osa-miRN2285c	PmiREN		Chr11	21857897	21857916	+	Y/Y
Osa-miR530	PmiREN		Chr4	8303664	8303684	-	Y/Y
Osa-miRN2291	PmiREN		Chr9	8969545	8969565	+	Y/Y
Osa-miRN2285d	PmiREN		Chr11	6974869	6974888	-	Y/Y
Osa-miRN2285e	PmiREN		Chr4	598059	598078	+	Y/Y
Osa-miRN2285f	PmiREN		Chr6	23376294	23376313	-	Y/Y
Osa-miRN2285a	PmiREN		Chr10	17481035	17481054	+	Y/Y
Osa-miRN2229b	PmiREN		Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN		Chr8	705385	705405	+	Y/Y
Osa-miRN2229a	PmiREN		Chr5	7377922	7377942	-	Y/Y
Osa-miRN03	RiceNCexp		Chr1	2309230	2309250	-	Y/Y
Osa-miRN09	RiceNCexp		Chr1	11666844	11666864	-	Y/Y
Osa-miRN22	RiceNCexp		Chr2	24120061	24120081	-	Y/Y
Osa-miRN25	RiceNCexp		Chr2	31205965	31205984	-	Y/Y
Osa-miRN26	RiceNCexp		Chr2	34280395	34280414	+	Y/Y
Osa-miRN33	RiceNCexp		Chr4	25026401	25026420	-	Y/Y
Osa-miRN39	RiceNCexp		Chr5	5230736	5230756	+	Y/Y
Osa-miRN43	RiceNCexp		Chr6	26554835	26554856	+	Y/Y
Osa-miRN48	RiceNCexp		Chr8	26807360	26807381	+	Y/Y
Osa-miRN56	RiceNCexp		Chr9	19792262	19792282	+	Y/Y
Osa-miRN58	RiceNCexp		Chr10	14483304	14483324	-	Y/Y
Osa-miRN65	RiceNCexp		Chr11	19480163	19480184	+	Y/Y