RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 71

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR164b	miRbase/PmiREN	/	Chr5	15896243	15896263	-	Y/N
Osa-miR399c	miRbase/PmiREN	/	Chr5	26305948	26305968	-	Y/Y
Osa-miR399h	miRbase/PmiREN	/	Chr5	26308004	26308024	+	Y/N
Osa-miR399k	miRbase/PmiREN	/	Chr5	26311328	26311348	+	Y/Y
Osa-miR156l	miRbase/PmiREN	/	Chr5	5230619	5230639	+	Y/Y
osa-miR156l-3p	miRbase		Chr5	5230735	5230756	+	Y/N
Osa-miR164c	miRbase/PmiREN	/	Chr5	17327450	17327470	+	Y/N
Osa-miR164f	miRbase/PmiREN	/	Chr5	23343931	23343951	+	Y/N
osa-miR426	miRbase		Chr5	174012	174032	+	N/N
osa-miR815a	miRbase		Chr5	29746690	29746710	+	Y/N
osa-miR815b	miRbase		Chr5	14992306	14992326	+	N/N
Osa-miR1425	miRbase/PmiREN	/	Chr5	8862162	8862182	+	Y/N
osa-miR1425-3p	miRbase		Chr5	8862219	8862239	+	Y/N
osa-miR1850.1	miRbase		Chr5	26275302	26275322	-	Y/N
osa-miR1850.2	miRbase		Chr5	26275277	26275297	-	Y/N
osa-miR1850.3	miRbase		Chr5	26275246	26275267	-	Y/N
osa-miR1851	miRbase		Chr5	26049753	26049773	+	Y/N
Osa-miR1852	miRbase/PmiREN	/	Chr5	20761126	20761148	+	N/N
Osa-miR1861f	miRbase/PmiREN	/	Chr5	18668414	18668435	+	Y/Y
osa-miR1861g	miRbase		Chr5	18668633	18668654	+	Y/N
osa-miR2093-5p	miRbase		Chr5	16056053	16056072	-	N/N
osa-miR2093-3p	miRbase		Chr5	16056034	16056053	-	N/N
osa-miR2102-5p	miRbase		Chr5	18250492	18250511	+	N/N
osa-miR2102-3p	miRbase		Chr5	18250557	18250578	+	N/N
osa-miR2869	miRbase		Chr5	26915339	26915359	-	N/N
osa-miR2871a-5p	miRbase		Chr5	3877019	3877042	+	Y/N
osa-miR2871a-3p	miRbase		Chr5	3877104	3877124	+	Y/N
osa-miR2919	miRbase		Chr5	9936948	9936966	-	N/N
osa-miR3981-5p	miRbase		Chr5	4302836	4302856	+	N/N
osa-miR3981-3p	miRbase		Chr5	4302897	4302917	+	N/N
osa-miR5078	miRbase		Chr5	21907872	21907892	-	N/N
osa-miR5151	miRbase		Chr5	3661606	3661627	-	Y/N
osa-miR5152-5p	miRbase		Chr5	28910228	28910248	-	N/N
osa-miR5152-3p	miRbase		Chr5	28910050	28910070	-	N/N
osa-miR5153	miRbase		Chr5	2518523	2518546	+	Y/N
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
osa-miR5502	miRbase		Chr5	28979946	28979967	-	N/N
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR812v	miRbase/PmiREN	/	Chr5	18432845	18432870	-	N/N
Osa-miR5825	miRbase/PmiREN	/	Chr5	23591566	23591591	-	Y/N
osa-miR5831	miRbase		Chr5	28577946	28577969	+	Y/N
Osa-miR5833	miRbase/PmiREN	/	Chr5	9382713	9382735	+	N/N
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
Osa-miRN2327	PmiREN		Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN		Chr5	13984508	13984528	-	N/Y
Osa-miR5801k	PmiREN		Chr5	16046868	16046887	+	Y/N
Osa-miRN2276d	PmiREN		Chr5	14765998	14766018	-	Y/N
Osa-miRN2259	PmiREN		Chr5	25503014	25503034	+	Y/N
Osa-miR812z	PmiREN		Chr5	20977759	20977780	-	Y/N
Osa-miRN2346	PmiREN		Chr5	6099540	6099560	+	N/Y
Osa-miRN2261	PmiREN		Chr5	20173002	20173022	-	Y/N
Osa-miRN2373b	PmiREN		Chr5	27494437	27494457	+	N/N
Osa-miR11337m	PmiREN		Chr5	22461929	22461949	+	Y/N
Osa-miR11337d	PmiREN		Chr5	24705913	24705933	+	Y/N
Osa-miR5151	PmiREN		Chr5	3661607	3661627	-	Y/N
Osa-miRN2302	PmiREN		Chr5	8249359	8249379	+	N/Y
Osa-miR1850	PmiREN		Chr5	26275302	26275322	-	Y/N
Osa-miRN2376	PmiREN		Chr5	13976622	13976642	+	N/Y
Osa-miR11339k	PmiREN		Chr5	176940	176963	+	N/N
Osa-miR11339t	PmiREN		Chr5	22998595	22998615	+	Y/N
Osa-miR1862a	PmiREN		Chr5	1928707	1928726	+	Y/Y
Osa-miR812ao	PmiREN		Chr5	5651689	5651710	+	Y/N
Osa-miR5152a	PmiREN		Chr5	28910228	28910248	-	N/N
Osa-miR5152b	PmiREN		Chr5	29148351	29148371	+	N/N
Osa-miR531e	PmiREN		Chr5	8564911	8564932	-	Y/N
Osa-miR5831	PmiREN		Chr5	28577938	28577960	+	Y/N
Osa-miRN2205	PmiREN		Chr5	3877018	3877038	+	Y/N
Osa-miRN2362	PmiREN		Chr5	24797708	24797728	+	Y/N
Osa-miRN2229a	PmiREN		Chr5	7377922	7377942	-	Y/Y
Osa-miRN39	RiceNCexp		Chr5	5230736	5230756	+	Y/Y
Osa-miRN40	RiceNCexp		Chr5	26311266	26311287	+	N/N