Chr:
Chr8
Start:
9192766
End:
9192786
Strand:
+
Sequence:
UGCGGAACCGUGCGGUGGCGC
Length:
21
precursor sequence:
GUCCCGCAGGCCAGCGCCGCGCCACCGCGCGGUUCCGCAGCAGGGACAUGCGCCACCCGUUACAGCCAACUGAAAUCUGCACUGAUUUGAUUACAUGCGCACGUAUAUAUGCAGUGCAUGCAGCGAGUGUGCGCUGUUCCUGGAUUCGGUCGCGCGUGGCCGUGCUGCGGAACCGUGCGGUGGCGCGGCGCCGGCCUGCGGGACCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
113
NEP:
41.24%
LE_num:
LEP:
5.47%
ME_num:
MEP:
45.26%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.70
Avg Expression:
10.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 3.64524243659513 | 0.0165961073582165 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -2.49460674784874 | 7.96045721634831e-15 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.5522634191648 | 4.12068436286052e-09 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.95562929590948 | 0.000260181449661591 |
| 5 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 3.13332726358122 | 0.00414698877242548 |
| 6 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | -3.82901535830475 | 0.00254350963133172 |